PDB: 208 resultsInfo pagesStatus searchChemie searchBIRD

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4ZKF	Crystal structure of human phosphodiesterase 12 Descriptor: 2',5'-phosphodiesterase 12, MAGNESIUM ION Authors: Kim, S.Y, Kohno, T, Mori, T, Kitano, K, Hakoshima, T. Deposit date: 2015-04-30 Release date: 2015-06-17 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Crystal structure of human phosphodiesterase To Be Published
8BVM	Cryo-EM structure of Hfq-Crc-rbsB translation repression complex Descriptor: Catabolite repression control protein, RNA-binding protein Hfq, rbsB mRNA Authors: Dendooven, T, Luisi, B.F. Deposit date: 2022-12-04 Release date: 2023-01-25 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Translational regulation by Hfq-Crc assemblies emerges from polymorphic ribonucleoprotein folding. Embo J., 42, 2023
8BVJ	Hfq-Crc-estA translation repression complex Descriptor: Catabolite repression control protein, RNA-binding protein Hfq, estA mRNA Authors: Dendooven, T, Luisi, B.F. Deposit date: 2022-12-04 Release date: 2023-01-25 Last modified: 2023-02-08 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Translational regulation by Hfq-Crc assemblies emerges from polymorphic ribonucleoprotein folding. Embo J., 42, 2023
8BVH	Cryo-EM structure of the Hfq-Crc-amiE translation repression assembly. Descriptor: Catabolite repression control protein, RNA-binding protein Hfq, amiE Authors: Dendooven, T, Luisi, B.F. Deposit date: 2022-12-03 Release date: 2023-06-07 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Translational regulation by Hfq-Crc assemblies emerges from polymorphic ribonucleoprotein folding. Embo J., 42, 2023
4RUW	The crystal structure of endonuclease/exonuclease/phosphatase from Beutenbergia cavernae DSM 12333 Descriptor: Endonuclease/exonuclease/phosphatase, GLYCEROL, ZINC ION Authors: Wu, R, Jedrzejczak, R, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2014-11-23 Release date: 2014-12-24 Method: X-RAY DIFFRACTION (1.281 Å) Cite: The crystal structure of endonuclease/exonuclease/phosphatase from Beutenbergia cavernae DSM 12333 To be Published
6RVZ	Crystal structure of ANGEL2, a 2',3'-cyclic phosphatase, in complex with adenosine-2',3'-vanadate Descriptor: ADENOSINE, MAGNESIUM ION, POTASSIUM ION, ... Authors: Kroupova, A, Jinek, M. Deposit date: 2019-06-03 Release date: 2020-05-20 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: ANGEL2 is a member of the CCR4 family of deadenylases with 2',3'-cyclic phosphatase activity. Science, 369, 2020
6RW0	Crystal structure of ANGEL2, a 2',3'-cyclic phosphatase Descriptor: GLYCEROL, MAGNESIUM ION, POTASSIUM ION, ... Authors: Kroupova, A, Jinek, M. Deposit date: 2019-06-03 Release date: 2020-05-20 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.45 Å) Cite: ANGEL2 is a member of the CCR4 family of deadenylases with 2',3'-cyclic phosphatase activity. Science, 369, 2020
6O1L	Architectural principles for Hfq/Crc-mediated regulation of gene expression Hfq-Crc-amiE 2:3:2 complex Descriptor: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq Authors: Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F. Deposit date: 2019-02-20 Release date: 2019-03-13 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Architectural principles for Hfq/Crc-mediated regulation of gene expression. Elife, 8, 2019
6O1K	Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:2:2 complex (core complex) Descriptor: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq Authors: Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F. Deposit date: 2019-02-20 Release date: 2019-03-13 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Architectural principles for Hfq/Crc-mediated regulation of gene expression Elife, 8, 2019
6O1M	Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:4:2 complex Descriptor: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq Authors: Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F. Deposit date: 2019-02-20 Release date: 2019-03-13 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.15 Å) Cite: Architectural principles for Hfq/Crc-mediated regulation of gene expression. Elife, 8, 2019
2F2F	Crystal structure of cytolethal distending toxin (CDT) from Actinobacillus actinomycetemcomitans Descriptor: Cytolethal distending toxin A, Cytolethal distending toxin B, cytolethal distending toxin C Authors: Yamada, T, Komoto, J, Saiki, K, Konishi, K, Takusagawa, F. Deposit date: 2005-11-16 Release date: 2006-03-28 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Variation of loop sequence alters stability of cytolethal distending toxin (CDT): crystal structure of CDT from Actinobacillus actinomycetemcomitans Protein Sci., 15, 2006
4F1I	Crystal structure of SeMet TDP2 from Caenorhabditis elegans Descriptor: 5'-tyrosyl-DNA phosphodiesterase, GLYCEROL Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2012-05-07 Release date: 2012-10-31 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
5TVQ	Mouse Tdp2 catalytic domain bound to SUMO2 Descriptor: ACETATE ION, CALCIUM ION, Small ubiquitin-related modifier 2, ... Authors: Schellenberg, M.J, Williams, R.S. Deposit date: 2016-11-09 Release date: 2017-09-27 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.35 Å) Cite: ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links. Science, 357, 2017
4GEW	Crystal structure of TDP2 from C. elegans Descriptor: 5'-tyrosyl-DNA phosphodiesterase, GLYCEROL Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2012-08-02 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
5TVP	SUMO2 bound to Mouse Tdp2 catalytic domain with a 5'-phosphorylated DNA ternary complex Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3'), ... Authors: Schellenberg, M.J, Williams, R.S. Deposit date: 2016-11-09 Release date: 2017-10-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.399 Å) Cite: ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links. Science, 357, 2017
4B8C	nuclease module of the yeast Ccr4-Not complex Descriptor: GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1, GLUCOSE-REPRESSIBLE ALCOHOL DEHYDROGENASE TRANSCRIPTIONAL EFFECTOR, POLY(A) RIBONUCLEASE POP2 Authors: Basquin, J, Conti, E. Deposit date: 2012-08-26 Release date: 2012-11-21 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.41 Å) Cite: Architecture of the Nuclease Module of the Yeast Ccr4-not Complex: The not1-Caf1-Ccr4 Interaction. Mol.Cell, 48, 2012
2A41	Ternary complex of the WH2 Domain of WIP with Actin-DNAse I Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Chereau, D, Kerff, F, Dominguez, R. Deposit date: 2005-06-27 Release date: 2005-11-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
7NXV	Crystal structure of the complex of DNase I/G-actin/PPP1R15A_582-621 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... Authors: Yan, Y, Ron, D. Deposit date: 2021-03-19 Release date: 2021-09-29 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Higher-order phosphatase-substrate contacts terminate the integrated stress response. Nat.Struct.Mol.Biol., 28, 2021
7NZM	Cryo-EM structure of pre-dephosphorylation complex of phosphorylated eIF2alpha with trapped holophosphatase (PP1A_D64A/PPP1R15A/G-actin/DNase I) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... Authors: Yan, Y, Hardwick, S, Ron, D. Deposit date: 2021-03-24 Release date: 2021-09-29 Last modified: 2021-10-20 Method: ELECTRON MICROSCOPY (3.96 Å) Cite: Higher-order phosphatase-substrate contacts terminate the integrated stress response. Nat.Struct.Mol.Biol., 28, 2021
2A42	Actin-DNAse I Complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... Authors: Chereau, D, Kerff, F, Dominguez, R. Deposit date: 2005-06-27 Release date: 2005-11-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
1ATN	Atomic structure of the actin:DNASE I complex Descriptor: ACTIN, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ... Authors: Kabsch, W, Mannherz, H.G, Suck, D, Pai, E, Holmes, K.C. Deposit date: 1991-03-08 Release date: 1992-07-15 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Atomic structure of the actin:DNase I complex. Nature, 347, 1990
4K6L	Structure of Typhoid Toxin Descriptor: Cytolethal distending toxin subunit B homolog, GLYCEROL, Putative pertussis-like toxin subunit Authors: Gao, X, Song, J, Galan, J. Deposit date: 2013-04-16 Release date: 2013-07-17 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.393 Å) Cite: Structure and function of the Salmonella Typhi chimaeric A(2)B(5) typhoid toxin. Nature, 499, 2013
7EE6	Crystal structure of PltC toxin Descriptor: ACETONE, CITRATE ANION, Cytolethal distending toxin subunit B family protein, ... Authors: Liu, X.Y, Chen, Z, Gao, X. Deposit date: 2021-03-17 Release date: 2021-12-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin. Mbio, 13, 2022
2A3Z	Ternary complex of the WH2 domain of WASP with Actin-DNAse I Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... Authors: Chereau, D, Kerff, F, Dominguez, R. Deposit date: 2005-06-27 Release date: 2005-11-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.078 Å) Cite: Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
2A40	Ternary complex of the WH2 domain of WAVE with Actin-DNAse I Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... Authors: Chereau, D, Kerff, F, Dominguez, R. Deposit date: 2005-06-27 Release date: 2005-11-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005

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