PDB: 1466 resultsInfo pagesStatus searchChemie searchBIRD

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5H07	TNIP2-Ub complex, C2 form Descriptor: Polyubiquitin-C, TNFAIP3-interacting protein 2 Authors: Lo, Y.C, Lin, S.C. Deposit date: 2016-10-04 Release date: 2017-03-08 Method: X-RAY DIFFRACTION (2.586 Å) Cite: Structural Insights into Linear Tri-ubiquitin Recognition by A20-Binding Inhibitor of NF-kappa B, ABIN-2 Structure, 25, 2017
5GVI	Zebrafish USP30 in complex with Lys6-linked diubiquitin Descriptor: Ubiquitin carboxyl-terminal hydrolase 30, ZINC ION, ubiquitin Authors: Sato, Y, Fukai, S. Deposit date: 2016-09-05 Release date: 2017-09-13 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Structural basis for specific cleavage of Lys6-linked polyubiquitin chains by USP30 Nat. Struct. Mol. Biol., 24, 2017
5GO0	Solution structure of nedd8 from Trypanosoma brucei Descriptor: Ubiquitin, putative Authors: Wang, R, Liao, S, Zhang, J, Tu, X. Deposit date: 2016-07-25 Release date: 2017-07-26 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of nedd8 from Trypanosoma brucei To Be Published
5GO7	Linear tri-ubiquitin Descriptor: D-ubiquitin, Ubiquitin Authors: Gao, S, Pan, M, Zheng, Y. Deposit date: 2016-07-26 Release date: 2016-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.801 Å) Cite: Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc., 138, 2016
5GOC	Lys11-linked diubiquitin Descriptor: D-ubiquitin, SODIUM ION, Ubiquitin Authors: Gao, S, Pan, M, Zheng, Y. Deposit date: 2016-07-26 Release date: 2016-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.733 Å) Cite: Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc., 138, 2016
5GOI	Lys48-linked di-ubiquitin Descriptor: D-ubiquitin, Ubiquitin Authors: Gao, S, Pan, M, Zheng, Y, Liu, L. Deposit date: 2016-07-27 Release date: 2016-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.594 Å) Cite: Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc., 138, 2016
2ZCC	Ubiquitin crystallized under high pressure Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure of Ubiquitin crystallized under high pressure to be published
2ZEQ	Crystal structure of ubiquitin-like domain of murine Parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K. Deposit date: 2007-12-14 Release date: 2008-08-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin Biochim.Biophys.Acta, 1784, 2008
3A9J	Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 2, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
2XK5	Crystal structure of K6-linked diubiquitin Descriptor: UBIQUITIN, ZINC ION Authors: Virdee, S, Chin, J.W, Komander, D. Deposit date: 2010-07-07 Release date: 2010-08-25 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Engineered Diubiquitin Synthesis Reveals K29-Isopeptide Specificity of an Otu Deubiquitinase Nat.Chem.Biol., 6, 2010
2XEW	Crystal structure of K11-linked diubiquitin Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRATE ANION, ... Authors: Bremm, A, Freund, S.M.V, Komander, D. Deposit date: 2010-05-18 Release date: 2010-07-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Lys11-Linked Ubiquitin Chains Adopt Compact Conformations and are Preferentially Hydrolyzed by the Deubiquitinase Cezanne Nat.Struct.Mol.Biol., 17, 2010
7UYH	Structure of the first OTU domain from Legionella pneumophila effector protein LotA bound to K6-linked diUb Descriptor: LotA, Ubiquitin Authors: Warren, G.D, Pruneda, J.N. Deposit date: 2022-05-06 Release date: 2022-12-21 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanism of Lys6 poly-ubiquitin specificity by the L. pneumophila deubiquitinase LotA. Mol.Cell, 83, 2023
2ZCB	Crystal Structure of ubiquitin P37A/P38A Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of ubiquitin P37A/P38A To be published
3AUL	Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation Descriptor: Polyubiquitin-C Authors: Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K. Deposit date: 2011-02-09 Release date: 2011-09-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Conformational dynamics of wild-type Lys48-linked diubiquitin in solution J.Biol.Chem., 286, 2011
3A9K	Crystal structure of the mouse TAB3-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 3, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
3B1L	Crystal Structure of parkin ubiquitin-like domain R33Q mutant Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K, Ikemiya, A, Amami, Y, In, Y, Ishida, T. Deposit date: 2011-07-04 Release date: 2012-07-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of parkin ubiquitin-like domain R33Q mutant to be published
3AXC	Crystal structure of linear diubiquitin Descriptor: GLYCEROL, Ubiquitin Authors: Rohaim, A, Kawasaki, M, Kato, R, Dikic, I, Wakatsuki, S. Deposit date: 2011-04-01 Release date: 2012-01-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structure of a compact conformation of linear diubiquitin Acta Crystallogr.,Sect.D, 68, 2012
3B0A	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, TRIS(HYDROXYETHYL)AMINOMETHANE, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
3B08	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, ZINC ION, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.701 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
3ALB	Cyclic Lys48-linked tetraubiquitin Descriptor: SULFATE ION, ubiquitin Authors: Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K. Deposit date: 2010-07-29 Release date: 2010-08-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of cyclic Lys48-linked tetraubiquitin Biochem.Biophys.Res.Commun., 2010
6V5D	EROS3 RDC and NOE Derived Ubiquitin Ensemble Descriptor: Ubiquitin Authors: Lange, O.F, Lakomek, N.A, Smith, C.A, Griesinger, C, de Groot, B.L. Deposit date: 2019-12-04 Release date: 2020-01-01 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Enhancing NMR derived ensembles with kinetics on multiple timescales. J.Biomol.Nmr, 74, 2020
6W9S	Crystal structure of an OTU deubiquitinase from Escherichia albertii bound to ubiquitin Descriptor: FORMIC ACID, OTU domain-containing protein EschOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2020-08-12 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
6W9R	Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel bound to ubiquitin Descriptor: CITRATE ANION, OTU domain-containing protein wMelOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
7P08	Solution structure of the human SF3A1 ubiquitin-like domain Descriptor: Isoform 1 of Splicing factor 3A subunit 1 Authors: de Vries, T, Campagne, S, Allain, F.H.T. Deposit date: 2021-06-29 Release date: 2022-02-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Sequence-specific RNA recognition by an RGG motif connects U1 and U2 snRNP for spliceosome assembly. Proc.Natl.Acad.Sci.USA, 119, 2022
7P0V	Crystal structure of human SF3A1 ubiquitin-like domain in complex with U1 snRNA stem-loop 4 Descriptor: Isoform 2 of Splicing factor 3A subunit 1, PENTAETHYLENE GLYCOL, RNA (5'-R(P*GP*GP*GP*GP*AP*CP*UP*GP*CP*GP*UP*UP*CP*GP*CP*GP*CP*UP*UP*UP*CP*CP*CP*C)-3'), ... Authors: Sabath, K, de Vries, T, Jonas, S. Deposit date: 2021-06-30 Release date: 2022-04-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Sequence-specific RNA recognition by an RGG motif connects U1 and U2 snRNP for spliceosome assembly. Proc.Natl.Acad.Sci.USA, 119, 2022

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