PDB: 1450 resultsInfo pagesStatus searchChemie searchBIRD

---

2RU6	The pure alternative state of ubiquitin Descriptor: Ubiquitin Authors: Kitazawa, S, Kameda, T, Kumo, A, Utsumi, M, Baxter, N, Kato, K, Williamson, M.P, Kitahara, R. Deposit date: 2013-12-04 Release date: 2014-02-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme Biochemistry, 53, 2014
2W9N	crystal structure of linear di-ubiquitin Descriptor: CHLORIDE ION, UBIQUITIN, ZINC ION Authors: Komander, D, Reyes-Turcu, F, Wilkinson, K.D, Barford, D. Deposit date: 2009-01-27 Release date: 2009-04-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Molecular Discrimination of Structurally Equivalent Lys 63-Linked and Linear Polyubiquitin Chains. Embo Rep., 10, 2009
2WYQ	THE CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE (UBL) DOMAIN OF HHR23A (HUMAN HOMOLOGUE A OF RAD23) Descriptor: SULFATE ION, UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A Authors: Chen, Y.W. Deposit date: 2009-11-19 Release date: 2010-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.651 Å) Cite: The Crystal Structure of the Ubiquitin-Like (Ubl) Domain of Human Homologue a of Rad23 (Hhr23A) Protein Protein Eng.Des.Sel., 24, 2011
2WX1	TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked tri-ubiquitin, P212121 Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION Authors: Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. Deposit date: 2009-10-30 Release date: 2009-11-24 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain Nat.Struct.Mol.Biol., 16, 2009
2WWZ	TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked di-ubiquitin, P212121 Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION Authors: Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. Deposit date: 2009-10-30 Release date: 2009-11-24 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain Nat.Struct.Mol.Biol., 16, 2009
2WX0	TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked di-ubiquitin, P21 Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION Authors: Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. Deposit date: 2009-10-30 Release date: 2009-11-24 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain Nat.Struct.Mol.Biol., 16, 2009
2XEW	Crystal structure of K11-linked diubiquitin Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRATE ANION, ... Authors: Bremm, A, Freund, S.M.V, Komander, D. Deposit date: 2010-05-18 Release date: 2010-07-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Lys11-Linked Ubiquitin Chains Adopt Compact Conformations and are Preferentially Hydrolyzed by the Deubiquitinase Cezanne Nat.Struct.Mol.Biol., 17, 2010
2XK5	Crystal structure of K6-linked diubiquitin Descriptor: UBIQUITIN, ZINC ION Authors: Virdee, S, Chin, J.W, Komander, D. Deposit date: 2010-07-07 Release date: 2010-08-25 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Engineered Diubiquitin Synthesis Reveals K29-Isopeptide Specificity of an Otu Deubiquitinase Nat.Chem.Biol., 6, 2010
2ZEQ	Crystal structure of ubiquitin-like domain of murine Parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K. Deposit date: 2007-12-14 Release date: 2008-08-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin Biochim.Biophys.Acta, 1784, 2008
2ZCC	Ubiquitin crystallized under high pressure Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure of Ubiquitin crystallized under high pressure to be published
2ZCB	Crystal Structure of ubiquitin P37A/P38A Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of ubiquitin P37A/P38A To be published
3A9J	Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 2, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
3A9K	Crystal structure of the mouse TAB3-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 3, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
3ALB	Cyclic Lys48-linked tetraubiquitin Descriptor: SULFATE ION, ubiquitin Authors: Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K. Deposit date: 2010-07-29 Release date: 2010-08-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of cyclic Lys48-linked tetraubiquitin Biochem.Biophys.Res.Commun., 2010
3AUL	Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation Descriptor: Polyubiquitin-C Authors: Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K. Deposit date: 2011-02-09 Release date: 2011-09-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Conformational dynamics of wild-type Lys48-linked diubiquitin in solution J.Biol.Chem., 286, 2011
3AXC	Crystal structure of linear diubiquitin Descriptor: GLYCEROL, Ubiquitin Authors: Rohaim, A, Kawasaki, M, Kato, R, Dikic, I, Wakatsuki, S. Deposit date: 2011-04-01 Release date: 2012-01-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structure of a compact conformation of linear diubiquitin Acta Crystallogr.,Sect.D, 68, 2012
3B0A	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, TRIS(HYDROXYETHYL)AMINOMETHANE, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
3B1L	Crystal Structure of parkin ubiquitin-like domain R33Q mutant Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K, Ikemiya, A, Amami, Y, In, Y, Ishida, T. Deposit date: 2011-07-04 Release date: 2012-07-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of parkin ubiquitin-like domain R33Q mutant to be published
3B08	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, ZINC ION, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.701 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
5DK8	Human ubiquitin in the P1 space group Descriptor: MAGNESIUM ION, Polyubiquitin-B Authors: Camara-Artigas, A, Bacarizo, J. Deposit date: 2015-09-03 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.32 Å) Cite: New crystal form of human ubiquitin in the presence of magnesium. Acta Crystallogr.,Sect.F, 72, 2016
7KEO	Crystal structure of K29-linked di-ubiquitin in complex with synthetic antigen binding fragment Descriptor: PHOSPHATE ION, Synthetic antigen binding fragment, heavy chain, ... Authors: Yu, Y, Zheng, Q, Erramilli, S, Pan, M, Kossiakoff, A, Liu, L, Zhao, M. Deposit date: 2020-10-11 Release date: 2021-07-28 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.9 Å) Cite: K29-linked ubiquitin signaling regulates proteotoxic stress response and cell cycle. Nat.Chem.Biol., 17, 2021
5EMZ	Crystal structure of K48-linked diubiquitin with F45W mutation in the proximal unit Descriptor: Polyubiquitin-B, SULFATE ION Authors: Nakasone, M.A, Paukstelis, P.J, Fushman, D. Deposit date: 2015-11-07 Release date: 2016-11-16 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Structural characterization and practical fluorescence applications of the F45W ubiquitin mutant To Be Published
7M4N	Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4M	Crystal structure of RBR E3 ligase RNF216 with ubiquitin Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4O	Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022

<12345678910111213141516>