PDB: 1464 resultsInfo pagesStatus searchChemie searchBIRD

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1UD7	SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7 Descriptor: PROTEIN (UBIQUITIN CORE MUTANT 1D7) Authors: Johnson, E.C, Lazar, G.A, Desjarlais, J.R, Handel, T.M. Deposit date: 1999-04-07 Release date: 1999-05-06 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin. Structure Fold.Des., 7, 1999
4WZP	Ser65 phosphorylated ubiquitin, major conformation Descriptor: SULFATE ION, ubiquitin Authors: Wauer, T, Wagstaff, J, Freund, S.M.V, Komander, D. Deposit date: 2014-11-20 Release date: 2015-01-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis. Embo J., 34, 2015
4XKL	Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin Descriptor: ACETATE ION, Calcium-binding and coiled-coil domain-containing protein 2, GLYCEROL, ... Authors: Xie, X, Li, F, Wang, Y, Lin, Z, Chen, X, Liu, J, Pan, L. Deposit date: 2015-01-12 Release date: 2015-11-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Molecular basis of ubiquitin recognition by the autophagy receptor CALCOCO2 Autophagy, 11, 2015
4XOK	Observing the overall rocking motion of a protein in a crystal. Descriptor: Ubiquitin, ZINC ION Authors: Coquelle, N, Ma, P, Schanda, P, Colletier, J.P. Deposit date: 2015-01-16 Release date: 2015-10-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Observing the overall rocking motion of a protein in a crystal. Nat Commun, 6, 2015
4Y1H	Crystal structure of K33 linked tri-Ubiquitin Descriptor: 1,2-ETHANEDIOL, Ubiquitin-40S ribosomal protein S27a Authors: Kristariyanto, Y.A, Abdul Rehman, S.A, Choi, S.Y, Ritorto, S, Campbell, D.G, Morrice, N.A, Toth, R, Kulathu, Y. Deposit date: 2015-02-07 Release date: 2015-03-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Assembly and structure of Lys33-linked polyubiquitin reveals distinct conformations. Biochem.J., 467, 2015
4XKH	CRYSTAL STRUCTURE OF THE AIRAPL TANDEM UIMS IN COMPLEX WITH A LYS48-LINKED TRI-UBIQUITIN Descriptor: AN1-type zinc finger protein 2B, Polyubiquitin-C Authors: Rahighi, S, Kawasaki, M, Stanhill, A, Wakatsuki, S. Deposit date: 2015-01-11 Release date: 2016-02-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3 Å) Cite: Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains. Structure, 24, 2016
2NBD	Solution structure of V26A mutant of Ubiquitin at pH 6.0 Descriptor: entity Authors: Surana, P, Das, R. Deposit date: 2016-02-04 Release date: 2016-05-18 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2NBE	Solution structure of V26A mutant of Ubiquitin at pH 2.0 Descriptor: entity Authors: Surana, P, Das, R. Deposit date: 2016-02-04 Release date: 2016-05-18 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2N7K	Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 Descriptor: NEDD8, Protein KHNYN Authors: Santonico, E, Nepravishta, R, Mattioni, A, Valentini, E, Mandaliti, W, Procopio, R, Iannuccelli, M, Castagnoli, L, Polo, S, Paci, M, Cesareni, G. Deposit date: 2015-09-14 Release date: 2016-09-14 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 To be Published
2N13	Complex structure of MyUb (1080-1122) of human Myosin VI with K63-diUb Descriptor: Ubiquitin, Unconventional myosin-VI Authors: He, F, Walters, K. Deposit date: 2015-03-20 Release date: 2016-03-09 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Myosin VI Contains a Compact Structural Motif that Binds to Ubiquitin Chains. Cell Rep, 14, 2016
2MQJ	Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum Descriptor: Ubiquitin-like protein Authors: Ye, K. Deposit date: 2014-06-22 Release date: 2015-06-24 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum To be Published
2NBU	Solution structure of the Rad23 ubiquitin-like (UBL) domain Descriptor: UV excision repair protein RAD23 Authors: Chen, X, Walters, K.J. Deposit date: 2016-03-12 Release date: 2016-07-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag Descriptor: TERBIUM(III) ION, Ubiquitin Authors: Silvaggi, N.R, Allen, K.N. Deposit date: 2007-01-13 Release date: 2007-06-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin Authors: Eddins, M.J, Wolberger, C. Deposit date: 2006-12-08 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
7BU0	Crystal structure of a OTU deubiquitinase in complex with Ub-PA Descriptor: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine Authors: Ouyang, S.Y, Zhen, X.K. Deposit date: 2020-04-03 Release date: 2020-11-18 Last modified: 2023-04-05 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes. Elife, 9, 2020
2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins Descriptor: Ubiquitin Authors: Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. Deposit date: 2006-11-01 Release date: 2007-05-08 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007
7CAP	Cyclic Lys48-linked triubiquitin Descriptor: Ubiquitin, ZINC ION Authors: Hiranyakorn, M, Yanaka, S, Satoh, T, Wilasri, T, Jityuti, B, Yagi-Utsumi, T, Kato, K. Deposit date: 2020-06-09 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.33 Å) Cite: NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains. Int J Mol Sci, 21, 2020
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase CBL-B, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-01-25 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
7EAL	The structure of the A20-Binding Inhibitor of NF-kB 1 in complex with di-ubiquitin Descriptor: GLYCEROL, TNFAIP3-interacting protein 1, ubiquitin Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-07 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7EB9	The structure of the A20-binding inhibitor of NF-kB 1 in complex with tetra-ubiquitin Descriptor: TNFAIP3-interacting protein 1, tetra ubiquitin Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-09 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7EAO	The structure of the A20-binding inhibitor of NF-kB 1 in complex with tri-ubiquitin Descriptor: Polyubiquitin-C, TNFAIP3-interacting protein 1 Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-07 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7E62	Mouse TAB2 NZF in complex with Lys6-linked diubiquitin Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, Ubiquitin, ... Authors: Sato, Y, Li, Y, Okatsu, K, Fukai, S. Deposit date: 2021-02-21 Release date: 2021-08-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Structural basis for specific recognition of K6-linked polyubiquitin chains by the TAB2 NZF domain. Biophys.J., 120, 2021
4PIJ	X-ray crystal structure of the K11S/K63S double mutant of ubiquitin Descriptor: GLYCEROL, SULFATE ION, Ubiquitin Authors: Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L. Deposit date: 2014-05-08 Release date: 2014-10-29 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Enhancing ubiquitin crystallization through surface-entropy reduction. Acta Crystallogr.,Sect.F, 70, 2014

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