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PDB: 133 results

5UTC
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BU of 5utc by Molmil
Deoxy form of sperm whale myoglobin V68A/I107Y
Descriptor: GLYCEROL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2017-02-14
Release date:2018-02-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Nitrosyl Myoglobins and Their Nitrite Precursors: Crystal Structural and Quantum Mechanics and Molecular Mechanics Theoretical Investigations of Preferred Fe -NO Ligand Orientations in Myoglobin Distal Pockets.
Biochemistry, 57, 2018
5UT7
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BU of 5ut7 by Molmil
Wild-type sperm whale myoglobin with nitrite
Descriptor: GLYCEROL, Myoglobin, NITRITE ION, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2017-02-14
Release date:2018-02-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Nitrosyl Myoglobins and Their Nitrite Precursors: Crystal Structural and Quantum Mechanics and Molecular Mechanics Theoretical Investigations of Preferred Fe -NO Ligand Orientations in Myoglobin Distal Pockets.
Biochemistry, 57, 2018
6CZF
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BU of 6czf by Molmil
The structure of E. coli PurF in complex with ppGpp-Mg
Descriptor: Amidophosphoribosyltransferase, GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2018-04-09
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Affinity-based capture and identification of protein effectors of the growth regulator ppGpp.
Nat. Chem. Biol., 15, 2019
7BUM
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BU of 7bum by Molmil
mcGAS bound with pGpA
Descriptor: ADENOSINE-5'-MONOPHOSPHATE, Cyclic GMP-AMP synthase, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Wang, B, Su, X.D.
Deposit date:2020-04-07
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.047 Å)
Cite:Mn2+Directly Activates cGAS and Structural Analysis Suggests Mn2+Induces a Noncanonical Catalytic Synthesis of 2'3'-cGAMP.
Cell Rep, 32, 2020
7BUQ
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BU of 7buq by Molmil
mcGAS bound with 23-cGAMP
Descriptor: Cyclic GMP-AMP synthase, ZINC ION, cGAMP
Authors:Wang, B, Su, X.D.
Deposit date:2020-04-07
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.091 Å)
Cite:Mn2+Directly Activates cGAS and Structural Analysis Suggests Mn2+Induces a Noncanonical Catalytic Synthesis of 2'3'-cGAMP.
Cell Rep, 32, 2020
8JIH
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BU of 8jih by Molmil
human telomere two-quartet G-quadruplex at pH 5.0
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
Authors:Wang, B, Galer, P, Plavec, J.
Deposit date:2023-05-26
Release date:2024-04-03
Method:SOLUTION NMR
Cite:Unveiling the structural mechanism of a G-quadruplex pH-Driven switch
Biochimie, 214, 2023
8JIC
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BU of 8jic by Molmil
human telomere two-quartet G-quadruplex at pH 7.0
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
Authors:Wang, B, Galer, P, Plavec, J.
Deposit date:2023-05-26
Release date:2024-04-03
Method:SOLUTION NMR
Cite:Unveiling the structural mechanism of a G-quadruplex pH-Driven switch
Biochimie, 214, 2023
7BUJ
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BU of 7buj by Molmil
mcGAS bound with pppGpG
Descriptor: Cyclic GMP-AMP synthase, GUANOSINE-5'-MONOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Wang, B, Su, X.D.
Deposit date:2020-04-07
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Mn2+Directly Activates cGAS and Structural Analysis Suggests Mn2+Induces a Noncanonical Catalytic Synthesis of 2'3'-cGAMP.
Cell Rep, 32, 2020
8C7B
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BU of 8c7b by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
Authors:Wang, B, Zalar, M, Plavec, J, Sket, P.
Deposit date:2023-01-14
Release date:2023-11-22
Method:SOLUTION NMR
Cite:Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
8C7A
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BU of 8c7a by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
Authors:Wang, B, Zalar, M, Plavec, J, Sket, P.
Deposit date:2023-01-14
Release date:2023-11-22
Method:SOLUTION NMR
Cite:Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
1NJ3
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BU of 1nj3 by Molmil
Structure and Ubiquitin Interactions of the Conserved NZF Domain of Npl4
Descriptor: NPL4, ZINC ION
Authors:Wang, B, Alam, S.L, Meyer, H.H, Payne, M, Stemmler, T.L, Davis, D.R, Sundquist, W.I.
Deposit date:2002-12-30
Release date:2003-04-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and ubiquitin interactions of the conserved zinc finger domain of Npl4.
J.Biol.Chem., 278, 2003
6TR2
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BU of 6tr2 by Molmil
Pre-folded structures govern folding pathways of human telomeric G-quadruplexes
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')
Authors:Wang, B, Frelih, T, Plavec, J, Sket, P.
Deposit date:2019-12-17
Release date:2020-01-01
Last modified:2020-07-15
Method:SOLUTION NMR
Cite:Pre-folded structures govern folding pathways of human telomeric G-quadruplexes.
Nucleic Acids Res., 48, 2020
6P3W
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BU of 6p3w by Molmil
Crystal structure of the Cyclin A-CDK2-ORC1 complex
Descriptor: Cyclin-A2, Cyclin-dependent kinase 2, ORC1 Peptide, ...
Authors:Wang, B, Song, J.
Deposit date:2019-05-24
Release date:2019-07-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structural basis for the ORC1-Cyclin A association.
Protein Sci., 28, 2019
1QYP
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BU of 1qyp by Molmil
THERMOCOCCUS CELER RPB9, NMR, 25 STRUCTURES
Descriptor: RNA POLYMERASE II, ZINC ION
Authors:Wang, B, Jones, D.N.M, Kaine, B.P, Weiss, M.A.
Deposit date:1997-08-19
Release date:1997-12-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases.
Structure, 6, 1998
1FFP
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BU of 1ffp by Molmil
CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH PEPTIDE GP33 (C9M/K1S)
Descriptor: BETA-2 MICROGLOBULIN BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ...
Authors:Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
Deposit date:2000-07-25
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Peptidic termini play a significant role in TCR recognition
J.IMMUNOL., 169, 2002
1FFN
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BU of 1ffn by Molmil
CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH PEPTIDE GP33(C9M)
Descriptor: BETA-2 MICROGLOBULIN, BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, ...
Authors:Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
Deposit date:2000-07-25
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Peptidic termini play a significant role in TCR recognition
J.IMMUNOL., 169, 2002
1FFO
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BU of 1ffo by Molmil
CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH SYNTHETIC PEPTIDE GP33 (C9M/K1A)
Descriptor: BETA-2 MICROGLOBULIN BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ...
Authors:Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
Deposit date:2000-07-25
Release date:2002-12-11
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Peptidic termini play a significant role in TCR recognition.
J.Immunol., 169, 2002
6VWP
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BU of 6vwp by Molmil
Crystal structure of E. coli guanosine kinase in complex with ppGpp
Descriptor: GUANOSINE, GUANOSINE-5',3'-TETRAPHOSPHATE, Inosine-guanosine kinase, ...
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2020-02-20
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020
6UX2
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BU of 6ux2 by Molmil
Crystal structure of ZIKV RdRp in complex with STAT2
Descriptor: Nonstructural Protein 5, SULFATE ION, Signal transducer and activator of transcription 2, ...
Authors:Wang, B, Song, J.
Deposit date:2019-11-06
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural basis for STAT2 suppression by flavivirus NS5.
Nat.Struct.Mol.Biol., 27, 2020
6VWO
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BU of 6vwo by Molmil
Crystal structure of E. coli guanosine kinase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE, Inosine-guanosine kinase, ...
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2020-02-20
Release date:2020-10-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020
5ILE
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BU of 5ile by Molmil
H64A sperm whale myoglobin with a Fe-tolyl moiety
Descriptor: Myoglobin, SULFATE ION, [3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)](3-methylphenyl)iron
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-03-03
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5ILP
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BU of 5ilp by Molmil
H64Q sperm whale myoglobin with a Fe-tolyl moiety
Descriptor: GLYCEROL, Myoglobin, SULFATE ION, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-03-04
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5IKS
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BU of 5iks by Molmil
Wild-type sperm whale myoglobin with a Fe-phenyl moiety
Descriptor: GLYCEROL, Myoglobin, SULFATE ION, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-03-03
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
6J0D
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BU of 6j0d by Molmil
Crystal structure of OsSUF4
Descriptor: ZINC ION, transcription factor
Authors:Wang, B, Luo, Q.
Deposit date:2018-12-24
Release date:2019-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.
Nat Commun, 10, 2019
5J62
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BU of 5j62 by Molmil
FMN-dependent Nitroreductase (CDR20291_0684) from Clostridium difficile R20291
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, PHOSPHATE ION, ...
Authors:Wang, B, Powell, S.M, Hessami, N, Najar, F.Z, Thomas, L.M, West, A.H, Karr, E.A, Richter-Addo, G.B.
Deposit date:2016-04-04
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of two nitroreductases from hypervirulent Clostridium difficile and functionally related interactions with the antibiotic metronidazole.
Nitric Oxide, 60, 2016

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