Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 115 results

3KO2
DownloadVisualize
BU of 3ko2 by Molmil
I-MsoI re-designed for altered DNA cleavage specificity (-7C)
Descriptor: 5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*GP*TP*CP*TP*GP*C)-3', 5'-D(*GP*CP*AP*GP*AP*CP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*CP*CP*G)-3', CALCIUM ION, ...
Authors:Taylor, G.K, Stoddard, B.L.
Deposit date:2009-11-13
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs.
Nucleic Acids Res., 38, 2010
8AD9
DownloadVisualize
BU of 8ad9 by Molmil
Crystal structure of ClpC2 C-terminal domain
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Cyclomarin A, ...
Authors:Taylor, G, Cui, H.J, Leodolter, J, Giese, C, Weber-Ban, E.
Deposit date:2022-07-08
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:ClpC2 protects mycobacteria against a natural antibiotic targeting ClpC1-dependent protein degradation.
Commun Biol, 6, 2023
8ADA
DownloadVisualize
BU of 8ada by Molmil
Crystal structure of ClpC2 N-terminal domain
Descriptor: Uncharacterized protein Rv2667
Authors:Taylor, G, Cui, H.J, Leodolter, J, Giese, C, Weber-Ban, E.
Deposit date:2022-07-08
Release date:2023-03-29
Last modified:2023-04-05
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:ClpC2 protects mycobacteria against a natural antibiotic targeting ClpC1-dependent protein degradation.
Commun Biol, 6, 2023
1KIT
DownloadVisualize
BU of 1kit by Molmil
VIBRIO CHOLERAE NEURAMINIDASE
Descriptor: CALCIUM ION, SIALIDASE
Authors:Taylor, G.L, Crennell, S.J, Garman, E.F, Vimr, E.R, Laver, W.G.
Deposit date:1996-06-21
Release date:1997-06-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Vibrio cholerae neuraminidase reveals dual lectin-like domains in addition to the catalytic domain.
Structure, 2, 1994
2SIM
DownloadVisualize
BU of 2sim by Molmil
THE STRUCTURES OF SALMONELLA TYPHIMURIUM LT2 NEURAMINIDASE AND ITS COMPLEX WITH A TRANSITION STATE ANALOGUE AT 1.6 ANGSTROMS RESOLUTION
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, SIALIDASE
Authors:Taylor, G.L, Crennell, S.J, Garman, E.F, Vimr, E.R, Laver, W.G.
Deposit date:1994-07-15
Release date:1994-11-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structures of Salmonella typhimurium LT2 neuraminidase and its complexes with three inhibitors at high resolution.
J.Mol.Biol., 259, 1996
2SIL
DownloadVisualize
BU of 2sil by Molmil
THE STRUCTURES OF SALMONELLA TYPHIMURIUM LT2 NEURAMINIDASE AND ITS COMPLEX WITH A TRANSITION STATE ANALOGUE AT 1.6 ANGSTROMS RESOLUTION
Descriptor: SIALIDASE
Authors:Taylor, G.L, Crennell, S.J, Garman, E.F, Vimr, E.R, Laver, W.G.
Deposit date:1994-07-13
Release date:1994-08-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structures of Salmonella typhimurium LT2 neuraminidase and its complexes with three inhibitors at high resolution.
J.Mol.Biol., 259, 1996
6SXI
DownloadVisualize
BU of 6sxi by Molmil
Antibody-anti-idiotype complex: AP33 Fab (hepatitis C virus E2 antibody) - B2.1A scFv (anti-idiotype)
Descriptor: Fab heavy chain, Fab light chain, GLYCEROL, ...
Authors:Taylor, G.L, Potter, J.A, Fadda, V, Patel, A.H, Owsianka, A.M, Cowtan, V.M.
Deposit date:2019-09-26
Release date:2020-10-07
Last modified:2021-01-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Development of a structural epitope mimic: an idiotypic approach to HCV vaccine design.
NPJ Vaccines, 6, 2021
3MIP
DownloadVisualize
BU of 3mip by Molmil
I-MsoI re-designed for altered DNA cleavage specificity (-8GCG)
Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*GP*AP*GP*CP*GP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*CP*GP*CP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*GP*GP*CP*GP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*CP*GP*CP*TP*CP*CP*G)-3'), ...
Authors:Taylor, G.K, Stoddard, B.L.
Deposit date:2010-04-11
Release date:2010-05-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs.
Nucleic Acids Res., 38, 2010
3MIS
DownloadVisualize
BU of 3mis by Molmil
I-MsoI re-designed for altered DNA cleavage specificity (-8G)
Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*GP*AP*GP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*CP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*GP*GP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*CP*TP*CP*CP*G)-3'), ...
Authors:Taylor, G.K, Stoddard, B.L.
Deposit date:2010-04-12
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs.
Nucleic Acids Res., 38, 2010
3R3P
DownloadVisualize
BU of 3r3p by Molmil
Homing Endonuclease I-Bth0305I Catalytic Domain
Descriptor: Mobile intron protein
Authors:Taylor, G.K, Stoddard, B.L.
Deposit date:2011-03-16
Release date:2011-10-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Activity, specificity and structure of I-Bth0305I: a representative of a new homing endonuclease family.
Nucleic Acids Res., 39, 2011
5PEP
DownloadVisualize
BU of 5pep by Molmil
X-RAY ANALYSES OF ASPARTIC PROTEASES. II. THREE-DIMENSIONAL STRUCTURE OF THE HEXAGONAL CRYSTAL FORM OF PORCINE PEPSIN AT 2.3 ANGSTROMS RESOLUTION
Descriptor: PEPSIN
Authors:Cooper, J.B, Khan, G, Taylor, G, Tickle, I.J, Blundell, T.L.
Deposit date:1990-05-30
Release date:1990-07-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:X-ray analyses of aspartic proteinases. II. Three-dimensional structure of the hexagonal crystal form of porcine pepsin at 2.3 A resolution.
J.Mol.Biol., 214, 1990
5F9T
DownloadVisualize
BU of 5f9t by Molmil
Crystal Structure of Streptococcus pneumoniae NanC, covalent complex with a fluorinated Neu5Ac derivative
Descriptor: (2R,3R,4R,5R,6R)-5-acetamido-2,3-difluoro-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-carboxylic acid, 5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid, GLYCEROL, ...
Authors:Owen, C.D, Lukacik, P, Potter, J.A, Walsh, M, Taylor, G.L.
Deposit date:2015-12-10
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Streptococcus pneumoniae NanC: STRUCTURAL INSIGHTS INTO THE SPECIFICITY AND MECHANISM OF A SIALIDASE THAT PRODUCES A SIALIDASE INHIBITOR.
J.Biol.Chem., 290, 2015
1W3I
DownloadVisualize
BU of 1w3i by Molmil
Sulfolobus solfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with pyruvate
Descriptor: 2-KETO-3-DEOXY GLUCONATE ALDOLASE, GLYCEROL, PYRUVIC ACID
Authors:Theodossis, A, Walden, H, Westwick, E.J, Connaris, H, Lamble, H.J, Hough, D.W, Danson, M.J, Taylor, G.L.
Deposit date:2004-07-15
Release date:2004-09-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structural basis for substrate promiscuity in 2-keto-3-deoxygluconate aldolase from the Entner-Doudoroff pathway in Sulfolobus solfataricus.
J. Biol. Chem., 279, 2004
1W3N
DownloadVisualize
BU of 1w3n by Molmil
Sulfolobus solfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with D-KDG
Descriptor: 2-KETO-3-DEOXY GLUCONATE ALDOLASE, 3-DEOXY-D-ARABINO-HEXONIC ACID, GLYCEROL
Authors:Theodossis, A, Walden, H, Westwick, E.J, Connaris, H, Lamble, H.J, Hough, D.W, Danson, M.J, Taylor, G.L.
Deposit date:2004-07-17
Release date:2004-09-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structural basis for substrate promiscuity in 2-keto-3-deoxygluconate aldolase from the Entner-Doudoroff pathway in Sulfolobus solfataricus.
J. Biol. Chem., 279, 2004
1W37
DownloadVisualize
BU of 1w37 by Molmil
2-keto-3-deoxygluconate(KDG) aldolase of Sulfolobus solfataricus
Descriptor: 2-KETO-3-DEOXY GLUCONATE ALDOLASE, GLYCEROL, SODIUM ION
Authors:Theodossis, A, Walden, H, Westwick, E.J, Connaris, H, Lamble, H.J, Hough, D.W, Danson, M.J, Taylor, G.L.
Deposit date:2004-07-13
Release date:2004-09-02
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for substrate promiscuity in 2-keto-3-deoxygluconate aldolase from the Entner-Doudoroff pathway in Sulfolobus solfataricus.
J. Biol. Chem., 279, 2004
4XYX
DownloadVisualize
BU of 4xyx by Molmil
NanB plus Optactamide
Descriptor: Optactamide, PHOSPHATE ION, Sialidase B
Authors:Rogers, G.W, Brear, P, Yang, L, Taylor, G.L, Westwood, N.J.
Deposit date:2015-02-03
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB
To Be Published
4UXD
DownloadVisualize
BU of 4uxd by Molmil
2-keto 3-deoxygluconate aldolase from Picrophilus torridus
Descriptor: 1,2-ETHANEDIOL, 2-DEHYDRO-3-DEOXY-D-GLUCONATE/2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE ALDOLASE, DI(HYDROXYETHYL)ETHER, ...
Authors:Priftis, A, Zaitsev, V, Reher, M, Johnsen, U, Danson, M.J, Taylor, G.L, Schoenheit, P, Crennell, S.J.
Deposit date:2014-08-22
Release date:2015-09-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insights into the Substrate Specificity of Archaeal Entner-Doudoroff Aldolases: The Structures of Picrophilus torridus 2-Keto-3-deoxygluconate Aldolase and Sulfolobus solfataricus 2-Keto-3-deoxy-6-phosphogluconate Aldolase in Complex with 2-Keto-3-deoxy-6-phosphogluconate.
Biochemistry, 57, 2018
4X4A
DownloadVisualize
BU of 4x4a by Molmil
Crystal structure of the intramolecular trans-sialidase from Ruminococcus gnavus in complex with 2,7-Anhydro-Neu5Ac
Descriptor: 2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC ACID, ACETYL GROUP, Anhydrosialidase, ...
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2014-12-02
Release date:2015-07-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Discovery of intramolecular trans-sialidases in human gut microbiota suggests novel mechanisms of mucosal adaptation.
Nat Commun, 6, 2015
4X49
DownloadVisualize
BU of 4x49 by Molmil
Crystal structure of the intramolecular trans-sialidase from Ruminococcus gnavus in complex with oseltamivir carboxylate
Descriptor: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, ACETYL GROUP, Anhydrosialidase, ...
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2014-12-02
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Discovery of intramolecular trans-sialidases in human gut microbiota suggests novel mechanisms of mucosal adaptation.
Nat Commun, 6, 2015
4X47
DownloadVisualize
BU of 4x47 by Molmil
Crystal structure of the intramolecular trans-sialidase from Ruminococcus gnavus in complex with Neu5Ac2en
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, Anhydrosialidase, PHOSPHATE ION
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2014-12-02
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of intramolecular trans-sialidases in human gut microbiota suggests novel mechanisms of mucosal adaptation.
Nat Commun, 6, 2015
4X6K
DownloadVisualize
BU of 4x6k by Molmil
Crystal structure of the intramolecular trans-sialidase from Ruminococcus gnavus in complex with Siastatin B
Descriptor: (2S,3R,4S,5S)-2-(acetylamino)-5-carboxy-3,4-dihydroxypiperidinium, ACETYL GROUP, Anhydrosialidase
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2014-12-08
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Discovery of intramolecular trans-sialidases in human gut microbiota suggests novel mechanisms of mucosal adaptation.
Nat Commun, 6, 2015
1HG3
DownloadVisualize
BU of 1hg3 by Molmil
Crystal structure of tetrameric TIM from Pyrococcus woesei.
Descriptor: 3-PHOSPHONOPROPANOIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Walden, H, Bell, G.S, Russell, R.J.M, Siebers, B, Hensel, R, Taylor, G.L.
Deposit date:2000-12-12
Release date:2001-03-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Tiny Tim: A Small, Tetrameric, Hyperthermostable Triosephosphate Isomerase
J.Mol.Biol., 306, 2001
6ER3
DownloadVisualize
BU of 6er3 by Molmil
Ruminococcus gnavus IT-sialidase CBM40 bound to alpha2,3 sialyllactose
Descriptor: BNR/Asp-box repeat protein, GLYCEROL, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2017-10-16
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Unravelling the specificity and mechanism of sialic acid recognition by the gut symbiont Ruminococcus gnavus.
Nat Commun, 8, 2017
6ER4
DownloadVisualize
BU of 6er4 by Molmil
Ruminococcus gnavus IT-sialidase CBM40 bound to alpha2,6 sialyllactose
Descriptor: BNR/Asp-box repeat protein, GLYCEROL, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Owen, C.D, Tailford, L.E, Taylor, G.L, Juge, N.
Deposit date:2017-10-16
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Unravelling the specificity and mechanism of sialic acid recognition by the gut symbiont Ruminococcus gnavus.
Nat Commun, 8, 2017
1WCQ
DownloadVisualize
BU of 1wcq by Molmil
Mutagenesis of the Nucleophilic Tyrosine in a Bacterial Sialidase to Phenylalanine.
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, GLYCEROL, SIALIDASE, ...
Authors:Newstead, S, Watson, J.N, Bennet, A.J, Taylor, G.
Deposit date:2004-11-19
Release date:2005-10-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Two Nucleophilic Mutants of the Micromonospora Viridifaciens Sialidase Operate with Retention of Configuration by Two Different Mechanisms.
Chembiochem, 6, 2005

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon