PDB Search results for query - Protein Data Bank Japan

PDB: 187 results

Cryo-EM structure of ligand histamine-bound Histamine H4 receptor Gi complex
Descriptor:	2-(1~{H}-imidazol-5-yl)ethyl carbamimidothioate, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:	Tang, W.Q, Sun, X.Y, Li, F.H, Wang, J.Y.
Deposit date:	2022-12-09
Release date:	2023-12-20
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Structure insights into Histamine H4 receptor activation by an endogenous ligand histamine and agonist imetit To Be Published

8HN8

Cryo-EM structure of ligand histamine-bound Histamine H4 receptor Gi complex
Descriptor:	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:	Tang, W.Q, Sun, X.Y, Li, F.H, Wang, J.Y.
Deposit date:	2022-12-07
Release date:	2023-12-20
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Structure insights into Histamine H4 receptor activation by an endogenous ligand histamine and agonist imetit To Be Published

6VHJ

Solution NMR of Prochlorosin 1.1 produced by Prochlorococcus MIT 9313
Descriptor:	Prochlorosin 1.1
Authors:	Bobeica, S.C, van der Donk, W.A, Tang, W.
Deposit date:	2020-01-09
Release date:	2020-07-08
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways. Chem Sci, 11, 2020

6XLY

CRYOEM STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS ZINC METALLOPROTEASE ZMP1 IN OPEN STATE
Descriptor:	Probable zinc metalloprotease Zmp1, ZINC ION
Authors:	Liang, W.G, Zhao, M, Tang, W.
Deposit date:	2020-06-29
Release date:	2020-12-23
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	Structural analysis of Mycobacterium tuberculosis M13 metalloprotease Zmp1 open states. Structure, 29, 2021

6XOS

CryoEM structure of human presequence protease in partial open state 1
Descriptor:	Presequence protease, mitochondrial
Authors:	Liang, W.G, Zhao, M, Tang, W.
Deposit date:	2020-07-07
Release date:	2021-07-07
Last modified:	2024-05-15
Method:	ELECTRON MICROSCOPY (3.7 Å)
Cite:	Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition. Nat Commun, 13, 2022

6XOU

CryoEM structure of human presequence protease in open state
Descriptor:	Presequence protease, mitochondrial
Authors:	Liang, W.G, Zhao, M, Tang, W.
Deposit date:	2020-07-07
Release date:	2021-07-07
Last modified:	2024-05-15
Method:	ELECTRON MICROSCOPY (4 Å)
Cite:	Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition. Nat Commun, 13, 2022

6XOV

CryoEM structure of human presequence protease in partial closed state 1
Descriptor:	Amyloid-beta precursor protein, Presequence protease, mitochondrial
Authors:	Liang, W.G, Zhao, M, Tang, W.
Deposit date:	2020-07-07
Release date:	2021-07-07
Last modified:	2024-05-15
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition. Nat Commun, 13, 2022

6XOT

CryoEM structure of human presequence protease in partial open state 2
Descriptor:	Presequence protease, mitochondrial
Authors:	Liang, W.G, Zhao, M, Tang, W.
Deposit date:	2020-07-07
Release date:	2021-07-07
Last modified:	2024-05-15
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition. Nat Commun, 13, 2022

6VGT

Solution NMR structure of enterococcal cytolysin L (CylLL") produced by Enterococcus faecalis
Descriptor:	cytolysin L
Authors:	Bobeica, S.C, van der Donk, W.A, Zhu, L, Tang, W.
Deposit date:	2020-01-08
Release date:	2020-07-08
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways. Chem Sci, 11, 2020

6VE9

Solution NMR structure of enterococcal cytolysin S (CylLS") produced by Enterococcus faecalis
Descriptor:	enterococcal cytolysin S
Authors:	Bobeica, S.C, van der Donk, W.A, Zhu, L, Tang, W.
Deposit date:	2019-12-30
Release date:	2020-07-08
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways. Chem Sci, 11, 2020

6XOW

CryoEM structure of human presequence protease in partial close state 2, induced by presequence of citrate synthase
Descriptor:	Presequence protease, mitochondrial
Authors:	Liang, W.G, Tang, W.
Deposit date:	2020-07-07
Release date:	2021-07-07
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (4.6 Å)
Cite:	CryoEM structure of human presequence protease in partial open state 2, induced by presequence of citrate synthase To Be Published

8D56

One RBD-up state of SARS-CoV-2 BA.2 variant spike protein
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Zhang, J, Tang, W.C, Gao, H.L, Shi, W, Peng, H.Q, Volloch, S.R, Xiao, T.S, Chen, B.
Deposit date:	2022-06-04
Release date:	2023-06-07
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Structural and functional characteristics of the SARS-CoV-2 Omicron subvariant BA.2 spike protein. Nat.Struct.Mol.Biol., 30, 2023

8D5A

Middle state of SARS-CoV-2 BA.2 variant spike protein
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Zhang, J, Tang, W.C, Gao, H.L, Shi, W, Peng, H.Q, Volloch, S.R, Xiao, T.S, Chen, B.
Deposit date:	2022-06-04
Release date:	2023-06-07
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	Structural and functional characteristics of the SARS-CoV-2 Omicron subvariant BA.2 spike protein. Nat.Struct.Mol.Biol., 30, 2023

8D55

Closed state of SARS-CoV-2 BA.2 variant spike protein
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Zhang, J, Tang, W.C, Gao, H.L, Shi, W, Peng, H.Q, Volloch, S.R, Xiao, T.S, Chen, B.
Deposit date:	2022-06-04
Release date:	2023-06-07
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (2.8 Å)
Cite:	Structural and functional characteristics of the SARS-CoV-2 Omicron subvariant BA.2 spike protein. Nat.Struct.Mol.Biol., 30, 2023

1F03

SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C
Descriptor:	CYTOCHROME B5, PROTOPORPHYRIN IX CONTAINING FE
Authors:	Wu, Y.B, Lu, J, Qian, C.M, Tang, W.X, Li, E.C, Wang, J.F, Wang, Y.H, Wang, W.H, Lu, J.X, Xie, Y, Huang, Z.X.
Deposit date:	2000-05-14
Release date:	2000-06-21
Last modified:	2021-11-03
Method:	SOLUTION NMR
Cite:	Solution structure of cytochrome b(5) mutant (E44/48/56A/D60A) and its interaction with cytochrome c. Eur.J.Biochem., 268, 2001

1F04

SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C
Descriptor:	CYTOCHROME B5, PROTOPORPHYRIN IX CONTAINING FE
Authors:	Wu, Y.B, Lu, J, Qian, C.M, Tang, W.X, Li, E.C, Wang, J.F, Wang, Y.H, Wang, W.H, Lu, J.X, Xie, Y, Huang, Z.X.
Deposit date:	2000-05-14
Release date:	2000-06-21
Last modified:	2021-11-03
Method:	SOLUTION NMR
Cite:	Solution structure of cytochrome b(5) mutant (E44/48/56A/D60A) and its interaction with cytochrome c. Eur.J.Biochem., 268, 2001

1PK0

Crystal Structure of the EF3-CaM complexed with PMEApp
Descriptor:	(ADENIN-9-YL-ETHOXYMETHYL)-HYDROXYPHOSPHINYL-DIPHOSPHATE, CALCIUM ION, Calmodulin, ...
Authors:	Shen, Y, Tang, W.J.
Deposit date:	2003-06-04
Release date:	2004-02-10
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (3.3 Å)
Cite:	Selective inhibition of anthrax edema factor by adefovir, a drug for chronic hepatitis B virus infection. Proc.Natl.Acad.Sci.USA, 101, 2004

2G54

Crystal structure of Zn-bound human insulin-degrading enzyme in complex with insulin B chain
Descriptor:	1,4-DIETHYLENE DIOXIDE, Insulin-degrading enzyme, ZINC ION, ...
Authors:	Shen, Y, Tang, W.-J.
Deposit date:	2006-02-22
Release date:	2006-10-24
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism. Nature, 443, 2006

2G47

Crystal structure of human insulin-degrading enzyme in complex with amyloid-beta (1-40)
Descriptor:	1,4-DIETHYLENE DIOXIDE, Insulin-degrading enzyme, amyloid protein beta A4
Authors:	Shen, Y, Tang, W.-J.
Deposit date:	2006-02-21
Release date:	2006-10-24
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism. Nature, 443, 2006

2G48

crystal structure of human insulin-degrading enzyme in complex with amylin
Descriptor:	1,4-DIETHYLENE DIOXIDE, Insulin-degrading enzyme, Islet amyloid polypeptide
Authors:	Shen, Y, Tang, W.-J.
Deposit date:	2006-02-21
Release date:	2006-10-24
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism. Nature, 443, 2006

2G49

Crystal structure of human insulin-degrading enzyme in complex with glucagon
Descriptor:	1,4-DIETHYLENE DIOXIDE, Insulin-degrading enzyme, glucagon preproprotein
Authors:	Shen, Y, Tang, W.-J.
Deposit date:	2006-02-21
Release date:	2006-10-24
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism. Nature, 443, 2006

2G56

crystal structure of human insulin-degrading enzyme in complex with insulin B chain
Descriptor:	1,4-DIETHYLENE DIOXIDE, Insulin, Insulin-degrading enzyme
Authors:	Shen, Y, Tang, W.-J.
Deposit date:	2006-02-22
Release date:	2006-10-24
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism. Nature, 443, 2006

2WK3

Crystal structure of human insulin-degrading enzyme in complex with amyloid-beta (1-42)
Descriptor:	BETA-AMYLOID PROTEIN 42, INSULIN DEGRADING ENZYME, ZINC ION
Authors:	Guo, Q, Tang, W.J.
Deposit date:	2009-06-05
Release date:	2009-11-03
Last modified:	2024-05-08
Method:	X-RAY DIFFRACTION (2.59 Å)
Cite:	Molecular Basis for the Recognition and Cleavages of Igf-II, Tgf-Alpha, and Amylin by Human Insulin Degrading Enzyme. J.Mol.Biol., 395, 2010

5L2U

Oligomer crystal structure of CC chemokine 5 (CCL5)
Descriptor:	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, C-C motif chemokine 5, CHLORIDE ION, ...
Authors:	Liang, W, Wang, A, Tang, W.-J.
Deposit date:	2016-08-02
Release date:	2017-08-09
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2.28 Å)
Cite:	High resolution oligomer crystal structure of CC chemokine 5 (CCL5) To Be Published

2YPU

human insulin degrading enzyme E111Q in complex with inhibitor compound 41367
Descriptor:	2-[[2-[[(2S)-3-(3H-IMIDAZOL-4-YL)-1-METHOXY-1-OXO-PROPAN-2-YL]AMINO]-2-OXO-ETHYL]-(PHENYLMETHYL)AMINO]ETHANOIC ACID, INSULIN-DEGRADING ENZYME, ZINC ION
Authors:	Guo, Q, Deprez-Poulain, R, Deprez, B, Tang, W.-J.
Deposit date:	2012-11-01
Release date:	2012-11-28
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Imidazole-Derived 2-[N-Carbamoylmethyl-Alkylamino]Acetic Acids,Substrate-Dependent Modulators of Insulin-Degrading Enzyme in Amyloid-Beta Hydrolysis Eur J Med Chem, 79C, 2014

<123 4 5 6 7 8 >

Total results:	187
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Tang, W"