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PDB: 60 results

7N9C
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Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes-CovS with NB95
Descriptor: Nanobody NB95, Spike glycoprotein
Authors:Sun, D, Zhang, C, Shi, Y.
Deposit date:2021-06-17
Release date:2021-08-04
Last modified:2021-08-11
Method:ELECTRON MICROSCOPY (3.71 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7N9E
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Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes-CovS with NB34
Descriptor: Nb34 nanobody, Spike glycoprotein
Authors:Sun, D, Zhang, C, Shi, Y.
Deposit date:2021-06-17
Release date:2021-08-04
Last modified:2021-08-11
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7N9B
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Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes-CovS with NB21
Descriptor: NB21 Nanobody, Spike glycoprotein
Authors:Sun, D, Zhang, C, Shi, Y.
Deposit date:2021-06-17
Release date:2021-08-04
Last modified:2021-08-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
8U1U
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Structure of a class A GPCR/agonist complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C-C motif chemokine 1,C-C chemokine receptor type 8,EGFP fusion protein, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Sun, D, Johnson, M, Masureel, M.
Deposit date:2023-09-02
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of antibody inhibition and chemokine activation of the human CC chemokine receptor 8.
Nat Commun, 14, 2023
8TLM
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Structure of a class A GPCR/Fab complex
Descriptor: C-C chemokine receptor type 8, Green fluorescent protein fusion, Fab heavy chain, ...
Authors:Sun, D, Johnson, M, Masureel, M.
Deposit date:2023-07-27
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of antibody inhibition and chemokine activation of the human CC chemokine receptor 8.
Nat Commun, 14, 2023
7N9A
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Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes-CovS RBD with NB21
Descriptor: Nanobody Nb21, Spike protein S1
Authors:Sun, D, Zhang, C, Shi, Y.
Deposit date:2021-06-17
Release date:2021-08-04
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes
To Be Published
6Q0X
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The cryo-EM structure of the SNX-BAR Mvp1 tetramer
Descriptor: Sorting nexin MVP1
Authors:Sun, D, Ford, M.G.J, Zhang, P.
Deposit date:2019-08-02
Release date:2020-04-01
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:The cryo-EM structure of the SNX-BAR Mvp1 tetramer.
Nat Commun, 11, 2020
1MG2
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BU of 1mg2 by Molmil
MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN
Descriptor: Amicyanin, COPPER (II) ION, CYTOCHROME C-L, ...
Authors:Sun, D, Chen, Z.W, Mathews, F.S, Davidson, V.L.
Deposit date:2002-08-14
Release date:2002-12-11
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:MUTATION OF AlPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN
Biochemistry, 41, 2002
1MG3
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MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN
Descriptor: Amicyanin, COPPER (II) ION, CYTOCHROME C-L, ...
Authors:Sun, D, Chen, Z.W, Mathews, F.S, Davidson, V.L.
Deposit date:2002-08-14
Release date:2002-12-11
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN
Biochemistry, 41, 2002
3NQW
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A metazoan ortholog of SpoT hydrolyzes ppGpp and plays a role in starvation responses
Descriptor: CG11900, MANGANESE (II) ION, SULFATE ION
Authors:Sun, D.W, Kim, H.Y, Kim, K.J, Jeon, Y.H, Chung, J.
Deposit date:2010-06-30
Release date:2010-09-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses
Nat.Struct.Mol.Biol., 17, 2010
3NR1
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A metazoan ortholog of SpoT hydrolyzes ppGpp and plays a role in starvation responses
Descriptor: HD domain-containing protein 3, MANGANESE (II) ION
Authors:Sun, D.W, Kim, H.Y, Kim, K.J, Jeon, Y.H, Chung, J.
Deposit date:2010-06-30
Release date:2010-09-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses
Nat.Struct.Mol.Biol., 17, 2010
4KB5
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Crystal structure of MycP1 from Mycobacterium smegmatis
Descriptor: GLYCEROL, Membrane-anchored mycosin mycp1
Authors:Sun, D.M, He, Y, Tian, C.L.
Deposit date:2013-04-23
Release date:2014-02-05
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The putative propeptide of MycP1 in mycobacterial type VII secretion system does not inhibit protease activity but improves protein stability.
Protein Cell, 4, 2013
3K8T
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Structure of eukaryotic rnr large subunit R1 complexed with designed adp analog compound
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 2'-deoxy-2'-(2-hydroxyethyl)adenosine 5'-(trihydrogen diphosphate), GLYCEROL, ...
Authors:Sun, D, Xu, H, Dealwis, C, Lee, R.E.
Deposit date:2009-10-14
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-Based Design, Synthesis, and Evaluation of 2'-(2-Hydroxyethyl)-2'-deoxyadenosine and the 5'-Diphosphate Derivative as Ribonucleotide Reductase Inhibitors
Chemmedchem, 4, 2009
7CFT
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Cryo-EM strucutre of human acid-sensing ion channel 1a in complex with snake toxin Mambalgin1 at pH 8.0
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acid-sensing ion channel 1, Mambalgin-1
Authors:Sun, D.M, Liu, S.L, Li, S.Y, Yang, F, Tian, C.L.
Deposit date:2020-06-28
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural insights into human acid-sensing ion channel 1a inhibition by snake toxin mambalgin1.
Elife, 9, 2020
7CFS
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Cryo-EM strucutre of human acid-sensing ion channel 1a at pH 8.0
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acid-sensing ion channel 1, CHOLESTEROL HEMISUCCINATE, ...
Authors:Sun, D.M, Liu, S.L, Li, S.Y, Yang, F, Tian, C.L.
Deposit date:2020-06-28
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Structural insights into human acid-sensing ion channel 1a inhibition by snake toxin mambalgin1.
Elife, 9, 2020
3UQH
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Crystal structure of aba receptor pyl10 (apo)
Descriptor: Abscisic acid receptor PYL10, SULFATE ION
Authors:Sun, D.M, Wang, H.P, Wu, M.H, Zang, J.Y, Tian, C.L.
Deposit date:2011-11-20
Release date:2011-12-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of Aba Receptor Pyl10
To be Published
4M1Z
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Crystal structure of MycP1 with the N-terminal propeptide removed
Descriptor: Membrane-anchored mycosin mycp1
Authors:Sun, D.M, He, Y, Wang, C.L, Zang, J.Y, Tian, C.L.
Deposit date:2013-08-04
Release date:2014-02-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The putative propeptide of MycP1 in mycobacterial type VII secretion system does not inhibit protease activity but improves protein stability.
Protein Cell, 4, 2013
3R6P
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BU of 3r6p by Molmil
Crystal structure of abscisic acid-bound PYL10
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Abscisic acid receptor PYL10
Authors:Sun, D.M, Wu, M.H, Wang, H.P, Zang, J.Y, Tian, C.L.
Deposit date:2011-03-22
Release date:2011-12-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of abscisic acid-bound PYL10
To be Published
7XIO
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Crystal structure of TYR from Ralstonia
Descriptor: PHOSPHATE ION, Polyphenol oxidase
Authors:Sun, D.Y, Cui, P.P, Liao, L.J, Liu, X.K, Liu, B, Guo, Y, Feng, Z, Zhang, J, Li, X, Zeng, Z.X.
Deposit date:2022-04-13
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of TYR from Ralstonia
To Be Published
7NA8
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Structures of human ghrelin receptor-Gi complexes with ghrelin and a synthetic agonist
Descriptor: 1-(methanesulfonyl)-1'-(2-methyl-L-alanyl-O-benzyl-D-seryl)-1,2-dihydrospiro[indole-3,4'-piperidine], Antibody fragment, CHOLESTEROL, ...
Authors:Liu, H, Sun, D, Sun, J, Zhang, C.
Deposit date:2021-06-20
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of human ghrelin receptor signaling by ghrelin and the synthetic agonist ibutamoren
Nat Commun, 12, 2021
1D0E
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CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN
Descriptor: 5'-D(*TP*TP*TP*CP*AP*TP*GP*CP*AP*TP*G)-3', REVERSE TRANSCRIPTASE
Authors:Najmudin, S, Cote, M.L, Sun, D, Yohannan, S, Montano, S.P, Gu, J, Georgiadis, M.M.
Deposit date:1999-09-09
Release date:2000-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: functional implications for template-primer binding to the fingers domain
J.Mol.Biol., 296, 2000
7NA7
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Structures of human ghrelin receptor-Gi complexes with ghrelin and a synthetic agonist
Descriptor: Antibody fragment, CHOLESTEROL, Ghrelin-27, ...
Authors:Liu, H, Sun, D, Sun, J, Zhang, C.
Deposit date:2021-06-20
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of human ghrelin receptor signaling by ghrelin and the synthetic agonist ibutamoren
Nat Commun, 12, 2021
6XF7
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SLP
Descriptor: Lambda 1 protein
Authors:Sutton, G, Sun, D.P, Fu, X.F, Kotecha, A, Hecksel, G.W, Clare, D.K, Zhang, P, Stuart, D, Boyce, M.
Deposit date:2020-06-15
Release date:2020-09-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Assembly intermediates of orthoreovirus captured in the cell.
Nat Commun, 11, 2020
1QAJ
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CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN
Descriptor: DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3'), REVERSE TRANSCRIPTASE
Authors:Najmudin, S, Cote, M, Sun, D, Yohannan, S, Montano, S.P, Gu, J, Georgiadis, M.M.
Deposit date:1999-03-18
Release date:2000-04-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: functional implications for template-primer binding to the fingers domain.
J.Mol.Biol., 296, 2000
6XF8
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DLP 5 fold
Descriptor: Inner capsid protein lambda-1, Inner capsid protein sigma-2, Outer capsid protein mu-1, ...
Authors:Sutton, G, Sun, D.P, Fu, X.F, Kotecha, A, Hecksel, G.W, Clare, D.K, Zhang, P, Stuart, D, Boyce, M.
Deposit date:2020-06-15
Release date:2020-09-23
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Assembly intermediates of orthoreovirus captured in the cell.
Nat Commun, 11, 2020

 

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