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PDB: 315 results

4WXY
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PLPS (inactive glutaminase mutant) co-crystallized with glutamine and R5P.
Descriptor: Glutamine amidotransferase subunit PdxT, Pyridoxal biosynthesis lyase PdxS
Authors:Smith, J.L, Smith, A.M.
Deposit date:2014-11-14
Release date:2015-01-14
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures capture three states in the catalytic cycle of a pyridoxal phosphate (PLP) synthase.
J.Biol.Chem., 290, 2015
4WY0
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PdxS (G. stearothermophilus) co-crystallized with R5P in the presence of ammonia.
Descriptor: 1,2-ETHANEDIOL, CACODYLATE ION, PHOSPHATE ION, ...
Authors:Smith, J.L, Smith, A.M.
Deposit date:2014-11-14
Release date:2015-01-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures capture three states in the catalytic cycle of a pyridoxal phosphate (PLP) synthase.
J.Biol.Chem., 290, 2015
4WXZ
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PdxS (G. stearothermophilus) co-crystallized with R5P
Descriptor: Pyridoxal biosynthesis lyase PdxS
Authors:Smith, J.L, Smith, A.M.
Deposit date:2014-11-14
Release date:2015-01-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures capture three states in the catalytic cycle of a pyridoxal phosphate (PLP) synthase.
J.Biol.Chem., 290, 2015
6N3P
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Crosslinked AcpP=FabZ complex from E. coli Type II FAS
Descriptor: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, Acyl carrier protein, N~3~-{(2R)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-N-(3-{[(1Z)-pent-1-en-1-yl]sulfonyl}propyl)-beta-alaninamide
Authors:Smith, J.L, Dodge, G.J.
Deposit date:2018-11-15
Release date:2019-03-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and dynamical rationale for fatty acid unsaturation inEscherichia coli.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
7N2T
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O-acetylserine sulfhydrylase from Citrullus vulgaris in the internal aldimine state, with citrate bound
Descriptor: CITRIC ACID, Cysteine synthase, PENTAETHYLENE GLYCOL, ...
Authors:Smith, J.L, Buller, A.R, Bingman, C.A.
Deposit date:2021-05-29
Release date:2022-07-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Investigation of beta-Substitution Activity of O-Acetylserine Sulfhydrolase from Citrullus vulgaris.
Chembiochem, 23, 2022
4K91
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Crystal structure of Penicillin-Binding Protein 5 (PBP5) from Pseudomonas aeruginosa in apo state
Descriptor: D-ala-D-ala-carboxypeptidase, SUCCINIC ACID
Authors:Smith, J, Toth, M, Vakulenko, S, Mobashery, S, Chen, Y.
Deposit date:2013-04-19
Release date:2013-09-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural analysis of the role of Pseudomonas aeruginosa penicillin-binding protein 5 in beta-lactam resistance.
Antimicrob.Agents Chemother., 57, 2013
5FFM
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BU of 5ffm by Molmil
Yellow fever virus helicase
Descriptor: Serine protease NS3
Authors:Smith, J.L.
Deposit date:2015-12-18
Release date:2015-12-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the Flavivirus helicase: implications for catalytic activity, protein interactions, and proteolytic processing.
J. Virol., 79, 2005
2KYJ
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BU of 2kyj by Molmil
Structure of the scorpion toxin U1-Liotoxin-Lw1a
Descriptor: LITX
Authors:Smith, J, Hill, J, Alewood, P.F, King, G.F.
Deposit date:2010-05-28
Release date:2011-06-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the scorpion toxin U1-Liotoxin-Lw1a
To be Published
1CQO
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NMR STRUCTURE OF THE PALINDROMIC DNA DECAMER D(GCGTTAACGC)2
Descriptor: 5'-d(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3'
Authors:Smith, J.A, Tsui, V.T, Chazin, W.J, Case, D.A.
Deposit date:1999-08-09
Release date:1999-08-23
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR Structure of the Palindromic DNA Decamer d(GCGTTAACGC)2
To be Published
3EBX
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REFINEMENT AT 1.4 ANGSTROMS RESOLUTION OF A MODEL OF ERABUTOXIN B. TREATMENT OF ORDERED SOLVENT AND DISCRETE DISORDER
Descriptor: ERABUTOXIN B, SULFATE ION
Authors:Smith, J.L, Corfield, P.W.R, Hendrickson, W.A, Low, B.W.
Deposit date:1988-01-15
Release date:1988-04-16
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Refinement at 1.4 A resolution of a model of erabutoxin b: treatment of ordered solvent and discrete disorder.
Acta Crystallogr.,Sect.A, 44, 1988
1DSM
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(-)-duocarmycin SA covalently linked to duplex DNA
Descriptor: 4-HYDROXY-8-METHYL-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER, 5'-D(*GP*AP*CP*TP*AP*AP*TP*TP*GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*AP*TP*TP*AP*GP*TP*C)-3'
Authors:Smith, J.A, Case, D.A, Chazin, W.J.
Deposit date:1999-03-27
Release date:1999-04-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The structural basis for in situ activation of DNA alkylation by duocarmycin SA
J.Mol.Biol., 300, 2000
1GPH
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STRUCTURE OF THE ALLOSTERIC REGULATORY ENZYME OF PURINE BIOSYNTHESIS
Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMINE PHOSPHORIBOSYL-PYROPHOSPHATE AMIDOTRANSFERASE, IRON/SULFUR CLUSTER
Authors:Smith, J.L.
Deposit date:1994-04-20
Release date:1994-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the allosteric regulatory enzyme of purine biosynthesis.
Science, 264, 1994
3FLB
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BU of 3flb by Molmil
RifR - Type II thioesterase from Rifamycin NRPS/PKS biosynthetic pathway - Form 2
Descriptor: CHLORIDE ION, RifR, TETRAETHYLENE GLYCOL
Authors:Smith, J.L, Akey, D.L.
Deposit date:2008-12-18
Release date:2009-01-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and Functional Analysis of RifR, the Type II Thioesterase from the Rifamycin Biosynthetic Pathway.
J.Biol.Chem., 284, 2009
3FLA
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BU of 3fla by Molmil
RifR - Type II thioesterase from Rifamycin NRPS/PKS biosynthetic pathway - Form 1
Descriptor: CHLORIDE ION, RifR
Authors:Smith, J.L, Akey, D.L.
Deposit date:2008-12-18
Release date:2009-01-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and Functional Analysis of RifR, the Type II Thioesterase from the Rifamycin Biosynthetic Pathway.
J.Biol.Chem., 284, 2009
1I8E
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BU of 1i8e by Molmil
NMR ENSEMBLE OF ION-SELECTIVE LIGAND A22 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
Descriptor: ION-SELECTIVE LIGAND A22
Authors:Smith, J.W, Le Calvez, H, Parra-Gessert, L, Preece, N.E, Jia, X, Assa-Munt, N.
Deposit date:2001-03-13
Release date:2002-07-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Selection and structure of ion-selective ligands for platelet integrin alpha IIb(beta) 3.
J.Biol.Chem., 277, 2002
1I98
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NMR ENSEMBLE OF ION-SELECTIVE LIGAND D18 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
Descriptor: ION-SELECTIVE LIGAND D18
Authors:Smith, J.W, Le Calvez, H, Parra-Gessert, L, Preece, N.E, Jia, X, Assa-Munt, N.
Deposit date:2001-03-18
Release date:2002-07-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Selection and structure of ion-selective ligands for platelet integrin alpha IIb(beta) 3.
J.Biol.Chem., 277, 2002
1I6Y
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NMR ENSEMBLE OF ION-SELECTIVE LIGAND A1 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
Descriptor: ION-SELECTIVE LIGAND A1
Authors:Smith, J.W, Le Calvez, H, Parra-Gessert, L, Preece, N.E, Jia, X, Assa-Munt, N.
Deposit date:2001-03-06
Release date:2002-07-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Selection and structure of ion-selective ligands for platelet integrin alpha IIb(beta) 3.
J.Biol.Chem., 277, 2002
1I93
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NMR ENSEMBLE OF ION-SELECTIVE LIGAND D16 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
Descriptor: ION-SELECTIVE LIGAND D16
Authors:Smith, J.W, Le Calvez, H, Parra-Gessert, L, Preece, N.E, Jia, X, Assa-Munt, N.
Deposit date:2001-03-17
Release date:2002-07-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Selection and structure of ion-selective ligands for platelet integrin alpha IIb(beta) 3.
J.Biol.Chem., 277, 2002
1QD9
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Bacillus subtilis YABJ
Descriptor: ACETIC ACID, ETHYL MERCURY ION, MERCURY (II) ION, ...
Authors:Smith, J.L, Sinha, S, Rappu, P, Lange, S.C, Mantsala, P, Zalkin, H.
Deposit date:1999-07-09
Release date:1999-11-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Bacillus subtilis YabJ, a purine regulatory protein and member of the highly conserved YjgF family.
Proc.Natl.Acad.Sci.USA, 96, 1999
1D0T
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SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
Descriptor: PHOSPHOROTHIOATE SUBSTITUTED PHAGE MS2 RNA BINDING SITE
Authors:Smith, J.S, Nikonowicz, E.P.
Deposit date:1999-09-14
Release date:2000-05-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
1HR3
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BU of 1hr3 by Molmil
STRUCTURE OF TRIMERIC HAEMERYTHRIN
Descriptor: HEMERYTHRIN, MONOAZIDO-MU-OXO-DIIRON
Authors:Smith, J.L, Hendrickson, W.A, Addison, A.W.
Deposit date:1983-05-06
Release date:1983-06-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Structure of trimeric haemerythrin.
Nature, 303, 1983
1D0U
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SOLUTION STRUCTURE OF AN RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
Descriptor: PHAGE MS2 RNA BINDING SITE
Authors:Smith, J.S, Nikonowicz, E.P.
Deposit date:1999-09-14
Release date:2000-05-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
4X7U
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BU of 4x7u by Molmil
MycF mycinamicin III 3'-O-methyltransferase in complex with Mg, SAH and mycinamicin III (substrate)
Descriptor: MAGNESIUM ION, MYCINAMICIN III, Mycinamicin III 3''-O-methyltransferase, ...
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4X81
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MycF mycinamicin III 3'-O-methyltransferase (E35Q, M56A, E139A variant) in complex with Mg, SAH and mycinamicin VI (MycE substrate)
Descriptor: DIMETHYL SULFOXIDE, MAGNESIUM ION, Mycinamicin III 3''-O-methyltransferase, ...
Authors:Bernard, S.M, Smith, J.L.
Deposit date:2014-12-09
Release date:2015-03-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural Basis of Substrate Specificity and Regiochemistry in the MycF/TylF Family of Sugar O-Methyltransferases.
Acs Chem.Biol., 10, 2015
4V9E
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Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded RNA.
Descriptor: 35-mer poly(U) RNA, Nucleocapsid protein
Authors:Raymond, D.D, Smith, J.L.
Deposit date:2012-09-19
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Phleboviruses encapsidate their genomes by sequestering RNA bases.
Proc.Natl.Acad.Sci.USA, 109, 2012

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