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PDB: 128 results

4UOH
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Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
Authors:Lopez-Zavala, A.A, Guevara-Hernandez, E, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
Deposit date:2014-06-03
Release date:2014-09-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
4UM4
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STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM ESCHERICHIA COLI IN COMPLEX WITH SULFATE
Descriptor: INORGANIC PYROPHOSPHATASE, SULFATE ION
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2014-05-15
Release date:2014-11-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:First attempts to crystallize a non-homogeneous sample of thioredoxin from Litopenaeus vannamei: What to do when you have diffraction data of a protein that is not the target?
Biochem Biophys Rep, 8, 2016
4UOF
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Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dADP
Descriptor: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
Authors:Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
Deposit date:2014-06-03
Release date:2014-09-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structure of Nucleoside Diphosphate Kinase from the Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
4UOG
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Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dCDP
Descriptor: DEOXYCYTIDINE DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
Authors:Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
Deposit date:2014-06-03
Release date:2014-09-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
8DWR
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BU of 8dwr by Molmil
Crystal structure of the L333V variant of catalase-peroxidase from Mycobacterium tuberculosis
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Diaz-Vilchis, A, Uribe-Vazquez, B, Avila-Linares, A, Rudino-Pinera, E, Soberon, X.
Deposit date:2022-08-01
Release date:2023-08-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterization of a catalase-peroxidase variant (L333V-KatG) identified in an INH-resistant Mycobacterium tuberculosis clinical isolate.
Biochem Biophys Rep, 37, 2024
1JT9
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Structure of the mutant F174A T form of the Glucosamine-6-Phosphate deaminase from E.coli
Descriptor: Glucosamine-6-Phosphate deaminase
Authors:Bustos-Jaimes, I, Sosa-Peinado, A, Rudino-Pinera, E, Horjales, E, Calcagno, M.L.
Deposit date:2001-08-20
Release date:2002-02-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:On the role of the conformational flexibility of the active-site lid on the allosteric kinetics of glucosamine-6-phosphate deaminase.
J.Mol.Biol., 319, 2002
5WHS
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Crystal structure of the catalase-peroxidase from Neurospora crassa at 2.6 A
Descriptor: Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz-Vilchis, A, Vega-Garcia, V, Rudino-Pinera, E, Hansberg, W.
Deposit date:2017-07-18
Release date:2018-01-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure, kinetics, molecular and redox properties of a cytosolic and developmentally regulated fungal catalase-peroxidase.
Arch. Biochem. Biophys., 640, 2018
3EJ6
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Neurospora Crassa Catalase-3 Crystal Structure
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Catalase-3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz, A, Valdes, V.-J, Rudino-Pinera, E, Horjales, E, Hansberg, W.
Deposit date:2008-09-17
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Function Relationships in Fungal Large-Subunit Catalases
J.Mol.Biol., 386, 2008
6VHQ
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Crystal structure of Bacillus subtilis levansucrase (D86A/E342A) in complex with oligosaccharides
Descriptor: BROMIDE ION, CALCIUM ION, Glycoside hydrolase family 68 protein, ...
Authors:Diaz-Vilchis, A, Raga-Carbajal, E, Rojas-Trejo, S, Olvera, C, Rudino-Pinera, E.
Deposit date:2020-01-10
Release date:2021-01-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.047 Å)
Cite:The molecular basis of the nonprocessive elongation mechanism in levansucrases.
J.Biol.Chem., 296, 2020
6TYR
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BU of 6tyr by Molmil
Crystal structure of Laccase from Thermus thermophilus HB27 with a close conformation of its beta-hairpin
Descriptor: CITRIC ACID, COPPER (II) ION, GLYCEROL, ...
Authors:Miranda-Blancas, R, Rudino-Pinera, E.
Deposit date:2019-08-09
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.813 Å)
Cite:The beta-hairpin from the Thermus thermophilus HB27 laccase works as a pH-dependent switch to regulate laccase activity.
J.Struct.Biol., 213, 2021
1SY7
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Crystal structure of the catalase-1 from Neurospora crassa, native structure at 1.75A resolution.
Descriptor: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, Catalase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz, A, Horjales, E, Rudino-Pinera, E, Arreola, R, Hansberg, W.
Deposit date:2004-04-01
Release date:2004-10-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Unusual Cys-Tyr covalent bond in a large catalase
J.Mol.Biol., 342, 2004
6PWQ
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Crystal structure of Levansucrase from Bacillus subtilis mutant S164A at 2.6 A
Descriptor: CALCIUM ION, GLYCEROL, Glycoside hydrolase family 68 protein, ...
Authors:Diaz-Vilchis, A, Rodriguez-Alegria, M.E, Ortiz-Soto, M.E, Rudino-Pinera, E, Lopez-Munguia, A.
Deposit date:2019-07-23
Release date:2020-07-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Implications of the mutation S164A on Bacillus subtilis levansucrase product specificity and insights into protein interactions acting upon levan synthesis.
Int.J.Biol.Macromol., 161, 2020
5WHQ
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BU of 5whq by Molmil
Crystal structure of the catalase-peroxidase from Neurospora crassa at 2.9 A
Descriptor: Catalase-peroxidase, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz-Vilchis, A, Vega-Garcia, V, Rudino-Pinera, E, Hansberg, W.
Deposit date:2017-07-18
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure, kinetics, molecular and redox properties of a cytosolic and developmentally regulated fungal catalase-peroxidase.
Arch. Biochem. Biophys., 640, 2018
4V2M
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Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 34 MGy, focused in disulfide bonds.
Descriptor: ACETATE ION, GLYCEROL, SULFATE ION, ...
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2014-10-10
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.841 Å)
Cite:Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus Vannamei.
Molecules, 19, 2014
4V2L
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Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 3.4 MGy, focused in disulfide bonds.
Descriptor: ACETATE ION, GLYCEROL, SULFATE ION, ...
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2014-10-10
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus Vannamei.
Molecules, 19, 2014
4V1D
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BU of 4v1d by Molmil
Ternary complex among two human derived single chain antibody fragments and Cn2 toxin from scorpion Centruroides noxius.
Descriptor: BETA-MAMMAL TOXIN CN2, SINGLE CHAIN ANTIBODY FRAGMENT LR, HEAVY CHAIN, ...
Authors:Riano-Umbarila, L, Serrano-Posada, H, Rojas-Trejo, S, Rudino-Pinera, E, Becerril, B.
Deposit date:2014-09-25
Release date:2015-10-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Optimal Neutralization of Centruroides Noxius Venom is Understood Through a Structural Complex between Two Antibody Fragments and the Cn2 Toxin.
J.Biol.Chem., 291, 2016
4V2N
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BU of 4v2n by Molmil
Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 85 MGy, focused in disulfide bonds
Descriptor: ACETATE ION, SULFATE ION, THIOREDOXIN
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2014-10-10
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus Vannamei.
Molecules, 19, 2014
6Q29
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BU of 6q29 by Molmil
Crystal structure of Laccase from Thermus thermophilus HB27 with an open conformation of beta-hairpin (Average deposted dose 2.5 MGy)
Descriptor: COPPER (II) ION, Laccase, TETRAETHYLENE GLYCOL, ...
Authors:Miranda-Blancas, R, Rudino-Pinera, E.
Deposit date:2019-08-07
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:The beta-hairpin from the Thermus thermophilus HB27 laccase works as a pH-dependent switch to regulate laccase activity.
J.Struct.Biol., 213, 2021
7KGC
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BU of 7kgc by Molmil
Crystal structure of a perchloric acid-soluble protein (PSP) from Trichomonas vaginalis at 1.95 A
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Putative translation initiation inhibitor
Authors:Diaz-Vilchis, A, Rudino-Pinera, E, Alvarez-Sanchez, M.E, Arreola, R.
Deposit date:2020-10-16
Release date:2021-10-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A Putative New Role of Tv-PSP1 Recognizes IRE and ERE Hairpin Structures from Trichomonas vaginalis.
Pathogens, 12, 2023
5AN1
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BU of 5an1 by Molmil
Crystallographic structure of the Glutathione S-Transferase from Litopenaeus vannamei complexed with Glutathione
Descriptor: GLUTATHIONE, GLUTATHIONE S-TRANSFERASE
Authors:Juarez-Martinez, A.B, Sotelo-Mundo, R, Rudino-Pinera, E.
Deposit date:2015-09-02
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a class-mu glutathione S-transferase from whiteleg shrimp Litopenaeus vannamei: structural changes in the xenobiotic binding H-site may alter the spectra of molecules bound.
J. Biochem. Mol. Toxicol., 31, 2017
7N5L
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PCNA from Thermococcus gammatolerans: crystal II, collection 20, 3.07 A, 77.0 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5K
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BU of 7n5k by Molmil
PCNA from Thermococcus gammatolerans: crystal II, collection 1, 1.98 A, 3.84 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5M
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BU of 7n5m by Molmil
PCNA from Thermococcus gammatolerans: crystal III, collection 1, 2.00 A, 1.91 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5I
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PCNA from Thermococcus gammatolerans: crystal I, collection 1, 1.95 A, 5.22 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5N
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BU of 7n5n by Molmil
PCNA from Thermococcus gammatolerans: crystal III, collection 15, 2.20 A, 28.7 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022

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PDB entries from 2024-05-15

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