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PDB: 65 results
5OPH
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BU of 5oph by Molmil
G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
Authors:Brcic, J, Plavec, J.
Deposit date:2017-08-09
Release date:2018-08-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.
Nucleic Acids Res., 46, 2018
5M1W
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BU of 5m1w by Molmil
Structure of a stable G-hairpin
Descriptor: DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3')
Authors:Gajarsky, M, Zivkovic, M.L, Stadlbauer, P, Pagano, B, Fiala, R, Amato, J, Tomaska, L, Sponer, J, Plavec, J, Trantirek, L.
Deposit date:2016-10-11
Release date:2017-03-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of a Stable G-Hairpin.
J. Am. Chem. Soc., 139, 2017
6GH0
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BU of 6gh0 by Molmil
Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure
Descriptor: DNA (5'-D(*GP*GP*CP*GP*AP*GP*GP*AP*GP*GP*GP*GP*CP*GP*TP*GP*GP*CP*CP*GP*GP*C)-3')
Authors:Kotar, A, Rigo, R, Sissi, C, Plavec, J.
Deposit date:2018-05-04
Release date:2019-01-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure.
Nucleic Acids Res., 47, 2019
5LIG
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BU of 5lig by Molmil
G-Quadruplex formed at the 5'-end of NHEIII_1 Element in human c-MYC promoter bound to triangulenium based fluorescence probe DAOTA-M2
Descriptor: 8,12-bis(2-morpholinoethyl)-8H-benzo[ij]xantheno[1,9,8-cdef][2,7]naphthyridin-12-iumhexafluorophosphate, DNA (5'-D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3')
Authors:Kotar, A, Wang, B, Shivalingam, A, Gonzalez-Garcia, J, Vilar, R, Plavec, J.
Deposit date:2016-07-14
Release date:2016-09-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Structure of a Triangulenium-Based Long-Lived Fluorescence Probe Bound to a G-Quadruplex.
Angew.Chem.Int.Ed.Engl., 55, 2016
8C7B
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BU of 8c7b by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
Authors:Wang, B, Zalar, M, Plavec, J, Sket, P.
Deposit date:2023-01-14
Release date:2023-11-22
Method:SOLUTION NMR
Cite:Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
8C7A
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BU of 8c7a by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
Authors:Wang, B, Zalar, M, Plavec, J, Sket, P.
Deposit date:2023-01-14
Release date:2023-11-22
Method:SOLUTION NMR
Cite:Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
5NYS
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BU of 5nys by Molmil
M2 G-quadruplex dilute solution
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
Authors:Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
Deposit date:2017-05-11
Release date:2018-04-11
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
5NYT
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BU of 5nyt by Molmil
M2 G-quadruplex 20 wt% ethylene glycol
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
Authors:Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
Deposit date:2017-05-11
Release date:2018-04-11
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
5O4D
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BU of 5o4d by Molmil
G-quadruplex of Human papillomavirus type 52
Descriptor: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*CP*AP*GP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*T)-3')
Authors:Marusic, M, Plavec, J.
Deposit date:2017-05-29
Release date:2018-06-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Towards Understanding of Polymorphism of the G-rich Region of Human Papillomavirus Type 52.
Molecules, 24, 2019
5NYU
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BU of 5nyu by Molmil
M2 G-quadruplex 10 wt% PEG8000
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
Authors:Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
Deposit date:2017-05-11
Release date:2018-04-11
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
5L6R
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BU of 5l6r by Molmil
PrP226* - Solution-state NMR structure of truncated human prion protein
Descriptor: Major prion protein
Authors:Kovac, V, Zupancic, B, Ilc, G, Curin Serbec, V, Plavec, J.
Deposit date:2016-05-31
Release date:2016-10-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Truncated prion protein PrP226* - A structural view on its role in amyloid disease.
Biochem. Biophys. Res. Commun., 484, 2017
5LQG
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BU of 5lqg by Molmil
A two-quartet G-quadruplex formed by human telomere in KCl solution at neutral pH
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
Authors:Galer, P, Wang, B, Sket, P, Plavec, J.
Deposit date:2016-08-17
Release date:2018-06-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M2L
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BU of 5m2l by Molmil
Structure of DNA tetrameric AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene
Descriptor: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3')
Authors:Kocman, V, Plavec, J.
Deposit date:2016-10-13
Release date:2017-05-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5LQH
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BU of 5lqh by Molmil
A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
Authors:Galer, P, Wang, B, Sket, P, Plavec, J.
Deposit date:2016-08-17
Release date:2018-01-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M1L
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BU of 5m1l by Molmil
Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene
Descriptor: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3')
Authors:Kocman, V, Plavec, J.
Deposit date:2016-10-09
Release date:2017-05-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5LSN
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BU of 5lsn by Molmil
SINEB2 element of the long non-coding RNA activator of translation AS Uchl1
Descriptor: RNA (29-MER)
Authors:Podbevsek, P, Plavec, J.
Deposit date:2016-09-05
Release date:2017-09-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1.
Sci Rep, 8, 2018
5M4W
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BU of 5m4w by Molmil
Structure of DNA AGCGA-quadruplex adopted by 15-mer oligonucleotide found in regulatory region of the PLEKHG3 human gene with G11 to I11 mutation, d(GCGAGGGAGCIAGGG),VK34_I11
Descriptor: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*IP*AP*GP*GP*G)-3')
Authors:Kocman, V, Plavec, J.
Deposit date:2016-10-19
Release date:2017-05-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5LKN
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BU of 5lkn by Molmil
NMR solution structure of human FNIII domain 2 of NCAM
Descriptor: Neural cell adhesion molecule 1
Authors:Slapsak, U, Salzano, G, Amin, L, Abskharon, R.N.N, Ilc, G, Zupancic, B, Biljan, I, Plavec, J, Giachin, G, Legname, G.
Deposit date:2016-07-22
Release date:2016-09-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The N Terminus of the Prion Protein Mediates Functional Interactions with the Neuronal Cell Adhesion Molecule (NCAM) Fibronectin Domain.
J.Biol.Chem., 291, 2016
5MTA
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BU of 5mta by Molmil
G-quadruplex formed within promoters of Plasmodium falciparum B var genes
Descriptor: UpsB-Q-1, DNA (34-MER)
Authors:Juribasic Kulcsar, M, Plavec, J.
Deposit date:2017-01-09
Release date:2018-02-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes
To Be Published
5MTG
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BU of 5mtg by Molmil
G-quadruplex formed within promoters of Plasmodium falciparum B var genes - form I
Descriptor: UpsB-Q-1 DNA (34-MER)
Authors:Juribasic Kulcsar, M, Plavec, J.
Deposit date:2017-01-09
Release date:2018-02-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes
To Be Published
2N2D
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BU of 2n2d by Molmil
Structure of DNA G-quadruplex adopted by ALS and FTD related GGGGCC repeat with G21 to Br-G21 substitution
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
Authors:Brcic, J, Plavec, J.
Deposit date:2015-05-06
Release date:2015-09-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution.
Nucleic Acids Res., 43, 2015
2M53
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BU of 2m53 by Molmil
G-rich VEGF aptamer with LNA modifications
Descriptor: G-rich VEGF aptamer
Authors:Marusic, M, Veedu, R.N, Plavec, J.
Deposit date:2013-02-13
Release date:2013-08-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold.
Nucleic Acids Res., 41, 2013
2JXV
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BU of 2jxv by Molmil
Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans
Descriptor: RNA (33-MER)
Authors:Cevec, M, Thibaudeau, C, Plavec, J.
Deposit date:2007-11-30
Release date:2008-04-29
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans.
Nucleic Acids Res., 36, 2008
2KUN
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BU of 2kun by Molmil
Three dimensional structure of HuPrP(90-231 M129 Q212P)
Descriptor: Major prion protein
Authors:Ilc, G, Giachin, G, Jaremko, M, Jaremko, L, Zhukov, I, Plavec, J, Legname, G, Benetti, F.
Deposit date:2010-02-23
Release date:2010-08-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of the human prion protein with the pathological Q212P mutation reveals unique structural features.
Plos One, 5, 2010
2KPV
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BU of 2kpv by Molmil
NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans
Descriptor: RNA (34-MER)
Authors:Cevec, M, Thibaudeau, C, Plavec, J.
Deposit date:2009-10-20
Release date:2010-08-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans.
Nucleic Acids Res., 38, 2010

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