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PDB: 137 results

4UE0
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BU of 4ue0 by Molmil
Structure of the bovine atadenovirus type 4 fibre head protein
Descriptor: CARBONATE ION, FIBER, THIOCYANATE ION
Authors:Nguyen, T.H, van Raaij, M.J.
Deposit date:2014-12-14
Release date:2015-06-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Crystal structure of the fibre head domain of bovine adenovirus 4, a ruminant atadenovirus.
Virol. J., 12, 2015
5OJF
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BU of 5ojf by Molmil
Crystal Structure of KLC2-TPR domain (fragment [A1-B6]
Descriptor: Kinesin light chain 2
Authors:Nguyen, T.Q, Chenon, M, Vilela, F, Velours, C, Andreani, J, Fernandez-Varela, P, Llinas, P, Menetrey, J.
Deposit date:2017-07-21
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural plasticity of the N-terminal capping helix of the TPR domain of kinesin light chain.
PLoS ONE, 12, 2017
7WWQ
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BU of 7wwq by Molmil
Crystal structure of human Ufd1-Npl4 complex
Descriptor: Nuclear protein localization protein 4 homolog, Ubiquitin recognition factor in ER-associated degradation protein 1
Authors:Nguyen, T.Q, Le, L.T.M, Kim, D.H, Ko, K.S, Lee, H.T, Nguyen, Y.T.K, Kim, H.S, Han, B.W, Kang, W, Yang, J.K.
Deposit date:2022-02-14
Release date:2022-09-21
Last modified:2022-11-16
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structural basis for the interaction between human Npl4 and Npl4-binding motif of human Ufd1.
Structure, 30, 2022
7WWP
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BU of 7wwp by Molmil
Crystal structure of human Npl4
Descriptor: Nuclear protein localization protein 4 homolog, ZINC ION
Authors:Nguyen, T.Q, Le, L.T.M, Kim, D.H, Ko, K.S, Lee, H.T, Nguyen, Y.T.K, Kim, H.S, Han, B.W, Kang, W, Yang, J.K.
Deposit date:2022-02-14
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structural basis for the interaction between human Npl4 and Npl4-binding motif of human Ufd1.
Structure, 30, 2022
6G13
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BU of 6g13 by Molmil
C-terminal domain of MERS-CoV nucleocapsid
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Nucleoprotein, ...
Authors:Nguyen, T.H.V, Ferron, F.P, Lichiere, J, Canard, B, Papageorgiou, N, Coutard, B.
Deposit date:2018-03-20
Release date:2019-02-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure and oligomerization state of the C-terminal region of the Middle East respiratory syndrome coronavirus nucleoprotein.
Acta Crystallogr D Struct Biol, 75, 2019
7Q5C
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BU of 7q5c by Molmil
Crystal structure of OmpG in space group 96
Descriptor: Outer membrane porin G, SODIUM ION, TETRAETHYLENE GLYCOL, ...
Authors:Nguyen, T.T.M, Khan, A.R, Barringer, R, McManus, J.J, Race, P.R.
Deposit date:2021-11-03
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.717 Å)
Cite:Experimental phase diagrams to optimise OmpG
To Be Published
6H7C
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BU of 6h7c by Molmil
tRNA guanine transglycosylase H333A mutant apo structure
Descriptor: GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION
Authors:Nguyen, T.X.P, Heine, A, Klebe, G.
Deposit date:2018-07-31
Release date:2019-08-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:tRNA guanine transglycosylase H333A mutant apo structure
To Be Published
5OJ8
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BU of 5oj8 by Molmil
Crystal structure of the KLC1-TPR domain ([A1-B5] fragment)
Descriptor: Kinesin light chain 1, PHOSPHATE ION
Authors:Nguyen, T.Q, Chenon, M, Vilela, F, Velours, C, Fernandez-Varela, P, Llinas, P, Menetrey, J.
Deposit date:2017-07-20
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.247 Å)
Cite:Structural plasticity of the N-terminal capping helix of the TPR domain of kinesin light chain.
PLoS ONE, 12, 2017
7CLS
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BU of 7cls by Molmil
Solution structure of an intramolecular G-quadruplex containing a duplex bulge
Descriptor: DNA (33-MER)
Authors:Nguyen, T.Q.N, Lim, K.W, Phan, A.T.
Deposit date:2020-07-21
Release date:2020-09-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Duplex formation in a G-quadruplex bulge.
Nucleic Acids Res., 48, 2020
6SY8
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BU of 6sy8 by Molmil
Mopeia Virus Exonuclease domain fully depleted of Manganese un ALD compound
Descriptor: Nucleoprotein, ZINC ION
Authors:Nguyen, T.H.V, Ferron, F.
Deposit date:2019-09-27
Release date:2021-07-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Inhibition of Arenaviridae nucleoprotein exonuclease by bisphosphonate
Iucrj, 2022
5GAN
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BU of 5gan by Molmil
The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom
Descriptor: 13 kDa ribonucleoprotein-associated protein, GUANOSINE-5'-TRIPHOSPHATE, Pre-mRNA-processing factor 31, ...
Authors:Nguyen, T.H.D, Galej, W.P, Bai, X.C, Oubridge, C, Scheres, S.H.W, Newman, A.J, Nagai, K.
Deposit date:2015-12-15
Release date:2016-01-27
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 angstrom resolution.
Nature, 530, 2016
8HRZ
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BU of 8hrz by Molmil
Crystal structure of the p97-N/D1 hexamer in complex with six p47-UBX domains
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NSFL1 cofactor p47, Transitional endoplasmic reticulum ATPase
Authors:Nguyen, T.Q, Kang, W.
Deposit date:2022-12-16
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the p97-N/D1 hexmaer in complex with six p47-UBX domains
To Be Published
5KSU
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BU of 5ksu by Molmil
Crystal structure of HLA-DQ2.5-CLIP1 at 2.73 resolution
Descriptor: HLA class II histocompatibility antigen gamma chain, HLA class II histocompatibility antigen, DQ alpha 1 chain, ...
Authors:Nguyen, T.-B, Jayaraman, P, Bergseng, E, Madhusudhan, M.S, Kim, C.-Y, Sollid, L.M.
Deposit date:2016-07-10
Release date:2017-04-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Unraveling the structural basis for the unusually rich association of human leukocyte antigen DQ2.5 with class-II-associated invariant chain peptides.
J. Biol. Chem., 292, 2017
2IPK
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BU of 2ipk by Molmil
Crystal Structure of the MHC Class II Molecule HLA-DR1 in Complex with the Fluorogenic Peptide, AcPKXVKQNTLKLAT (X=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]-L-alanine) and the Superantigen, SEC3 Variant 3B2
Descriptor: Enterotoxin type C-3, HA related Fluorogenic Peptide, AcPKXVKQNTLKLAT (X=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]-L-alanine), ...
Authors:Nguyen, T.T, Stern, L.J.
Deposit date:2006-10-12
Release date:2007-03-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Fluorogenic probes for monitoring peptide binding to class II MHC proteins in living cells.
Nat.Chem.Biol., 3, 2007
3TIE
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BU of 3tie by Molmil
Crystal structure of the vaccinia derived peptide A11R in complex with the murine MHC CLASS I H-2 KB
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-B alpha chain, ...
Authors:Nguyen, T.T, Shen, Z.T, Stern, L.J.
Deposit date:2011-08-20
Release date:2012-08-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Disparate epitopes mediating protective heterologous immunity to unrelated viruses share peptide-MHC structural features recognized by cross-reactive T cells.
J.Immunol., 191, 2013
3TID
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BU of 3tid by Molmil
Crystal structure of the LCMV derived peptide GP34 in complex with the murine mhc class I H-2 Kb
Descriptor: ACETATE ION, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Nguyen, T.T, Shen, Z.T, Stern, L.J.
Deposit date:2011-08-20
Release date:2012-08-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Disparate epitopes mediating protective heterologous immunity to unrelated viruses share peptide-MHC structural features recognized by cross-reactive T cells.
J.Immunol., 191, 2013
5GAO
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BU of 5gao by Molmil
Head region of the yeast spliceosomal U4/U6.U5 tri-snRNP
Descriptor: Pre-mRNA-splicing factor 8, Pre-mRNA-splicing helicase BRR2, Saccharomyces cerevisiae strain UOA_M2 chromosome 5 sequence, ...
Authors:Nguyen, T.H.D, Galej, W.P, Bai, X.C, Oubridge, C, Scheres, S.H.W, Newman, A.J, Nagai, K.
Deposit date:2015-12-15
Release date:2016-01-27
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 angstrom resolution.
Nature, 530, 2016
6K95
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BU of 6k95 by Molmil
Crystal structural of human glutathione-specific gamma-glutamylcyclotransferase 2 (ChaC2)
Descriptor: Glutathione-specific gamma-glutamylcyclotransferase 2
Authors:Nguyen, T.K.Y, Han, B.W.
Deposit date:2019-06-14
Release date:2020-04-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structural and Functional Analyses of Human ChaC2 in Glutathione Metabolism.
Biomolecules, 10, 2019
6TYO
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BU of 6tyo by Molmil
Salmonella Typhi PltB Homopentamer with Neu-5NAc-4OAc-alpha-2-3-Gal-beta-1-4-GlcNAc Glycans
Descriptor: 4-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Pertussis-like toxin subunit
Authors:Nguyen, T, Milano, S.K, Yang, Y.A, Song, J.
Deposit date:2019-08-09
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication.
Plos Pathog., 16, 2020
6TYQ
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BU of 6tyq by Molmil
Salmonella Typhi PltB Homopentamer with Neu-5NAc-9OAc-alpha-2-6-Gal-beta-1-4-GlcNAc Glycans
Descriptor: 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Pertussis-like toxin subunit B
Authors:Nguyen, T, Milano, S.K, Yang, Y.A, Song, J.
Deposit date:2019-08-09
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication.
Plos Pathog., 16, 2020
6TYN
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BU of 6tyn by Molmil
Salmonella Typhi PltB Homopentamer with Neu-5NAc-9OAc-alpha-2-3-Gal-beta-1-4-GlcNAc Glycans
Descriptor: 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Pertussis like toxin subunit B
Authors:Nguyen, T, Milano, S.K, Yang, Y.A, Song, J.
Deposit date:2019-08-09
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication.
Plos Pathog., 16, 2020
8SXP
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BU of 8sxp by Molmil
Crystal structure of long neurotoxin from the venom of the king cobra (3FTx-L15) in complex with Fab of broadly neutralizing antibody 95Mat5
Descriptor: 95Mat5 Fab heavy chain, 95Mat5 Fab light chain, Long neurotoxin 2
Authors:Nguyen, T.K.Y.
Deposit date:2023-05-23
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Synthetic development of a broadly neutralizing antibody against snake venom long-chain neurotoxins
Sci Transl Med, 16, 2024
3ISI
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BU of 3isi by Molmil
Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide
Descriptor: (2S)-2-{[(S)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]methyl}butanedioic acid, ZINC ION, renal dipeptidase
Authors:Nguyen, T.T.
Deposit date:2009-08-25
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide
To be Published
3ITC
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BU of 3itc by Molmil
Crystal structure of Sco3058 with bound citrate and glycerol
Descriptor: CITRIC ACID, GLYCEROL, ZINC ION, ...
Authors:Nguyen, T.T, Cummings, J.A, Tsai, C.-L, Barondeau, D.P, Raushel, F.M.
Deposit date:2009-08-28
Release date:2010-02-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure, mechanism, and substrate profile for Sco3058: the closest bacterial homologue to human renal dipeptidase
Biochemistry, 49, 2010
7SBN
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BU of 7sbn by Molmil
Human glutaminase C (Y466W) with L-Gln, closed conformation
Descriptor: GLUTAMINE, Isoform 3 of Glutaminase kidney isoform, mitochondrial
Authors:Nguyen, T.-T.T, Cerione, R.A.
Deposit date:2021-09-25
Release date:2022-02-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:High-resolution structures of mitochondrial glutaminase C tetramers indicate conformational changes upon phosphate binding.
J.Biol.Chem., 298, 2022

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