8ZYH
| Crystal structure of a cupin protein (tm1459, I49C-4py/H52A/H54A/C106D mutant) in copper (Cu) substituted form | Descriptor: | COPPER (II) ION, Cupin type-2 domain-containing protein, HEXAETHYLENE GLYCOL | Authors: | Morita, Y, Kubo, H, Matsumoto, R, Fujieda, N. | Deposit date: | 2024-06-17 | Release date: | 2024-09-04 | Method: | X-RAY DIFFRACTION (1.07 Å) | Cite: | Copper center in artificial non-heme metalloenzyme To Be Published
|
|
8ZYG
| Crystal structure of a cupin protein (tm1459, I49C-4py/H52A/C106D mutant) in copper (Cu) substituted form | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COPPER (II) ION, Cupin type-2 domain-containing protein, ... | Authors: | Morita, Y, Kubo, H, Matsumoto, R, Fujieda, N. | Deposit date: | 2024-06-17 | Release date: | 2024-09-04 | Last modified: | 2024-10-23 | Method: | X-RAY DIFFRACTION (1.08 Å) | Cite: | Copper center in artificial non-heme metalloenzyme To Be Published
|
|
6KIQ
| Complex of yeast cytoplasmic dynein MTBD-High and MT with DTT | Descriptor: | Alpha tubulin, Dynein heavy chain, cytoplasmic, ... | Authors: | Komori, Y, Nishida, N, Shimada, I, Kikkawa, M. | Deposit date: | 2019-07-19 | Release date: | 2020-03-04 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (3.62 Å) | Cite: | Structural basis for two-way communication between dynein and microtubules. Nat Commun, 11, 2020
|
|
6KIO
| Complex of yeast cytoplasmic dynein MTBD-High and MT without DTT | Descriptor: | Dynein heavy chain, cytoplasmic, Tubulin alpha-1A chain, ... | Authors: | Komori, Y, Nishida, N, Shimada, I, Kikkawa, M. | Deposit date: | 2019-07-19 | Release date: | 2020-03-04 | Last modified: | 2020-03-11 | Method: | ELECTRON MICROSCOPY (3.94 Å) | Cite: | Structural basis for two-way communication between dynein and microtubules. Nat Commun, 11, 2020
|
|
5EVY
| Salicylate hydroxylase substrate complex | Descriptor: | 2-HYDROXYBENZOIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Salicylate hydroxylase | Authors: | Morimoto, Y, Uemura, T. | Deposit date: | 2015-11-20 | Release date: | 2015-12-16 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.47 Å) | Cite: | The catalytic mechanism of decarboxylative hydroxylation of salicylate hydroxylase revealed by crystal structure analysis at 2.5 angstrom resolution Biochem.Biophys.Res.Commun., 469, 2016
|
|
5B5J
| Hen egg white lysozyme with boron tracedrug UTX-97 | Descriptor: | 2-cyano-3-((6-(((2-((2-cyanoethyl)(borocaptate-10B)sulfonio)acetyl)carbamoyl)oxy)hexyl)amino)quinoxaline 1,4-dioxide, Lysozyme C, SODIUM ION | Authors: | Morimoto, Y. | Deposit date: | 2016-05-11 | Release date: | 2017-06-28 | Last modified: | 2024-10-16 | Method: | X-RAY DIFFRACTION (1.26 Å) | Cite: | Structural Insight Into Protein Binding of Boron Tracedrug UTX-97 Revealed by the Co-Crystal Structure With Lysozyme at 1.26 angstrom Resolution. J Pharm Sci, 105, 2016
|
|
3QUG
| Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Gallium-porphyrin | Descriptor: | GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING GA, ... | Authors: | Moriwaki, Y, Caaveiro, J.M.M, Tsumoto, K. | Deposit date: | 2011-02-24 | Release date: | 2011-03-30 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus. Biochemistry, 50, 2011
|
|
3QUH
| |
2RVQ
| Solution structure of the isolated histone H2A-H2B heterodimer | Descriptor: | Histone H2A type 1-B/E, Histone H2B type 1-J | Authors: | Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y. | Deposit date: | 2016-03-28 | Release date: | 2016-05-25 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Solution structure of the isolated histone H2A-H2B heterodimer Sci Rep, 6, 2016
|
|
2DU2
| Crystal Structure Analysis of the L-Lactate Oxidase | Descriptor: | FLAVIN MONONUCLEOTIDE, Lactate oxidase | Authors: | Morimoto, Y. | Deposit date: | 2006-07-19 | Release date: | 2006-12-05 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | The crystal structure of L-lactate oxidase from Aerococcus viridans at 2.1A resolution reveals the mechanism of strict substrate recognition Biochem.Biophys.Res.Commun., 350, 2006
|
|
7F21
| L-lactate oxidase with D-lactate | Descriptor: | FLAVIN MONONUCLEOTIDE, L-lactate oxidase, LACTIC ACID | Authors: | Morimoto, Y, Inaka, K. | Deposit date: | 2021-06-10 | Release date: | 2022-03-23 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.38 Å) | Cite: | Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5. Biochem.Biophys.Res.Commun., 568, 2021
|
|
7F22
| L-lactate oxidase with pyruvate | Descriptor: | FLAVIN MONONUCLEOTIDE, L-lactate oxidase, PYRUVIC ACID | Authors: | Morimoto, Y, Inaka, K. | Deposit date: | 2021-06-10 | Release date: | 2022-03-23 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.41 Å) | Cite: | Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5. Biochem.Biophys.Res.Commun., 568, 2021
|
|
7F20
| L-lactate oxidase with L-lactate | Descriptor: | (2S)-2-HYDROXYPROPANOIC ACID, FLAVIN MONONUCLEOTIDE, L-lactate oxidase | Authors: | Morimoto, Y, Inaka, K. | Deposit date: | 2021-06-10 | Release date: | 2022-03-23 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5. Biochem.Biophys.Res.Commun., 568, 2021
|
|
2E77
| Crystal structure of L-lactate oxidase with pyruvate complex | Descriptor: | FLAVIN MONONUCLEOTIDE, Lactate oxidase, PYRUVIC ACID | Authors: | Morimoto, Y. | Deposit date: | 2007-01-06 | Release date: | 2007-11-27 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystallographic study on the interaction of L-lactate oxidase with pyruvate at 1.9 Angstrom resolution. Biochem.Biophys.Res.Commun., 358, 2007
|
|
7F1Y
| L-lactate oxidase without substrate | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, FLAVIN MONONUCLEOTIDE, ... | Authors: | Morimoto, Y, Inaka, K. | Deposit date: | 2021-06-10 | Release date: | 2022-06-15 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Dynamic interactions in the l-lactate oxidase active site facilitate substrate binding at pH4.5. Biochem.Biophys.Res.Commun., 568, 2021
|
|
2DXM
| Neutron Structure Analysis of Deoxy Human Hemoglobin | Descriptor: | Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Morimoto, Y. | Deposit date: | 2006-08-28 | Release date: | 2007-12-04 | Last modified: | 2024-04-03 | Method: | NEUTRON DIFFRACTION (2.1 Å) | Cite: | Protonation states of buried histidine residues in human deoxyhemoglobin revealed by neutron crystallography. J.Am.Chem.Soc., 129, 2007
|
|
2CYM
| EFFECTS OF AMINO ACID SUBSTITUTION ON THREE-DIMENSIONAL STRUCTURE: AN X-RAY ANALYSIS OF CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH AT 2 ANGSTROMS RESOLUTION | Descriptor: | CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Morimoto, Y, Tani, T, Okumura, H, Higuchi, Y, Yasuoka, N. | Deposit date: | 1993-09-29 | Release date: | 1994-04-30 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Effects of amino acid substitution on three-dimensional structure: an X-ray analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 2 A resolution. J.Biochem.(Tokyo), 110, 1991
|
|
3AB5
| |
2AMG
| STRUCTURE OF HYDROLASE (GLYCOSIDASE) | Descriptor: | 1,4-ALPHA-D-GLUCAN MALTOTETRAHYDROLASE, CALCIUM ION | Authors: | Morishita, Y, Hasegawa, K, Matsuura, Y, Kubota, M, Sakai, S, Katsube, Y. | Deposit date: | 1996-12-23 | Release date: | 1997-04-01 | Last modified: | 2024-06-05 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of a maltotetraose-forming exo-amylase from Pseudomonas stutzeri. J.Mol.Biol., 267, 1997
|
|
5WX8
| Human herpesvirus 6A immediate early protein 2 C-terminal domain | Descriptor: | Immediate-early protein 2 | Authors: | Nishimura, M, Wang, J, Wakata, A, Sakamoto, K, Mori, Y. | Deposit date: | 2017-01-06 | Release date: | 2017-08-02 | Last modified: | 2017-12-06 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structure of the DNA-Binding Domain of Human Herpesvirus 6A Immediate Early Protein 2. J. Virol., 91, 2017
|
|
6LKT
| Crystal structure of the Fab fragment of murine monoclonal antibody KH-1 against Human herpesvirus 6B | Descriptor: | antibody Fab Fragment L-chain, antibody Fab fragment H chain | Authors: | Nishimura, M, Novita, B.D, Kato, T, Tjan, L.H, Wang, B, Wakata, A, Poetranto, A.L, Kawabata, A, Tang, H, Aoshi, T, Mori, Y. | Deposit date: | 2019-12-20 | Release date: | 2020-06-17 | Last modified: | 2024-10-16 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural basis for the interaction of human herpesvirus 6B tetrameric glycoprotein complex with the cellular receptor, human CD134. Plos Pathog., 16, 2020
|
|
6LTG
| Crystal structure of the Fab fragment of murine monoclonal antibody OHV-3 against Human herpesvirus 6B | Descriptor: | MAGNESIUM ION, antibody Fab fragment H-chain, antibody Fab fragment L-chain | Authors: | Nishimura, M, Novita, B.D, Kato, T, Tjan, L.H, Wang, B, Wakata, A, Poetranto, A.L, Kawabata, A, Tang, H, Aoshi, T, Mori, Y. | Deposit date: | 2020-01-22 | Release date: | 2020-06-17 | Last modified: | 2024-10-09 | Method: | X-RAY DIFFRACTION (1.63 Å) | Cite: | Structural basis for the interaction of human herpesvirus 6B tetrameric glycoprotein complex with the cellular receptor, human CD134. Plos Pathog., 16, 2020
|
|
8XI6
| SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Ishimaru, H, Nishimura, M, Shigematsu, H, Marini, M.I, Hasegawa, N, Takamiya, R, Iwata, S, Mori, Y. | Deposit date: | 2023-12-19 | Release date: | 2024-04-24 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (2.3 Å) | Cite: | Epitopes of an antibody that neutralizes a wide range of SARS-CoV-2 variants in a conserved subdomain 1 of the spike protein. J.Virol., 98, 2024
|
|
8H3M
| Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, MO1 heavy chain, Spike glycoprotein | Authors: | Ishimaru, H, Nishimura, M, Sutandhio, S, Shigematsu, H, Kato, K, Hasegawa, N, Mori, Y. | Deposit date: | 2022-10-09 | Release date: | 2023-05-10 | Last modified: | 2023-08-02 | Method: | ELECTRON MICROSCOPY (2.48 Å) | Cite: | Identification and Analysis of Monoclonal Antibodies with Neutralizing Activity against Diverse SARS-CoV-2 Variants. J.Virol., 97, 2023
|
|
8H3N
| Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, MO1 heavy-chain, MO1 light chain, ... | Authors: | Ishimaru, H, Nishimura, M, Sutandhio, S, Shigematsu, H, Kato, K, Hasegawa, N, Mori, Y. | Deposit date: | 2022-10-09 | Release date: | 2023-05-10 | Last modified: | 2024-10-09 | Method: | ELECTRON MICROSCOPY (2.73 Å) | Cite: | Identification and Analysis of Monoclonal Antibodies with Neutralizing Activity against Diverse SARS-CoV-2 Variants. J.Virol., 97, 2023
|
|