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PDB: 138 results

6BHO
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BU of 6bho by Molmil
Green Light-Absorbing State of NpR6012g4, a Red/Green Cyanobacteriochrome
Descriptor: Methyl-accepting chemotaxis sensory transducer with phytochrome sensor, PHYCOCYANOBILIN
Authors:Lim, S, Yu, Q, Rockwell, N.C, Martin, S.S, Lagarias, J.C, Ames, J.B.
Deposit date:2017-10-31
Release date:2018-04-18
Last modified:2019-12-04
Method:SOLUTION NMR
Cite:Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3M6N
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BU of 3m6n by Molmil
Crystal structure of RpfF
Descriptor: RpfF protein
Authors:Lim, S.C, Cheng, Z, Qamra, R, Song, H.
Deposit date:2010-03-16
Release date:2010-09-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of the Sensor-Synthase Interaction in Autoinduction of the Quorum Sensing Signal DSF Biosynthesis
Structure, 18, 2010
6XF1
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BU of 6xf1 by Molmil
Nesprin-2G(aa1425-1649)-FHOD1(aa1-339) complex, H. sapiens
Descriptor: FH1/FH2 domain-containing protein 1, Nesprin-2
Authors:Lim, S.M, Schwartz, T.U.
Deposit date:2020-06-15
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of FHOD1-Nesprin1/2 complexes reveal alternate binding modes for the FH3 domain of formins.
Structure, 29, 2021
6XF2
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BU of 6xf2 by Molmil
Nesprin-1G (aa2070-2200)-FHOD1(aa1-339) complex, H. sapiens
Descriptor: FH1/FH2 domain-containing protein 1, Nesprin-1
Authors:Lim, S.M, Schwartz, T.U.
Deposit date:2020-06-15
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (7.11 Å)
Cite:Structures of FHOD1-Nesprin1/2 complexes reveal alternate binding modes for the FH3 domain of formins.
Structure, 29, 2021
4R1C
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BU of 4r1c by Molmil
Crystal Structure of 3D7 strain Plasmodium falciparum AMA1
Descriptor: Apical membrane antigen 1, AMA1
Authors:Lim, S.S, Norton, R.S, McGowan, S.
Deposit date:2014-08-04
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and Dynamics of Apical Membrane Antigen 1 from Plasmodium falciparum FVO.
Biochemistry, 53, 2014
4R19
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BU of 4r19 by Molmil
Crystal Structure of 3D7 strain Plasmodium falciparum AMA1
Descriptor: Apical membrane antigen 1, AMA1
Authors:Lim, S.S, Norton, R.S, McGowan, S.
Deposit date:2014-08-04
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and Dynamics of Apical Membrane Antigen 1 from Plasmodium falciparum FVO.
Biochemistry, 53, 2014
4R1A
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BU of 4r1a by Molmil
Crystal Structure of FVO strain Plasmodium falciparum AMA1
Descriptor: Apical membrane antigen 1
Authors:Lim, S.S, Norton, R.S, McGowan, S.
Deposit date:2014-08-04
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and Dynamics of Apical Membrane Antigen 1 from Plasmodium falciparum FVO.
Biochemistry, 53, 2014
4R1B
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BU of 4r1b by Molmil
Crystal Structure of 3D7 strain Plasmodium falciparum AMA1
Descriptor: Apical membrane antigen 1, AMA1
Authors:Lim, S.S, Norton, R.S, McGowan, S.
Deposit date:2014-08-04
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and Dynamics of Apical Membrane Antigen 1 from Plasmodium falciparum FVO.
Biochemistry, 53, 2014
5EBB
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BU of 5ebb by Molmil
Structure of human sphingomyelinase phosphodiesterase like 3A (SMPDL3A) with Zn2+
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acid sphingomyelinase-like phosphodiesterase 3a, GLYCEROL, ...
Authors:Lim, S.M, Yeung, K, Tresaugues, L, Teo, H.L, Nordlund, P.
Deposit date:2015-10-19
Release date:2016-01-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure and catalytic mechanism of human sphingomyelin phosphodiesterase like 3a - an acid sphingomyelinase homologue with a novel nucleotide hydrolase activity.
Febs J., 283, 2016
5EBE
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BU of 5ebe by Molmil
Structure of human sphingomyelinase phosphodiesterase like 3A (SMPDL3A) with 5' CMP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-O-phosphono-beta-D-ribofuranose, ...
Authors:Lim, S.M, Yeung, K, Tresaugues, L, Teo, H.L, Nordlund, P.
Deposit date:2015-10-19
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure and catalytic mechanism of human sphingomyelin phosphodiesterase like 3a - an acid sphingomyelinase homologue with a novel nucleotide hydrolase activity.
Febs J., 283, 2016
4C11
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BU of 4c11 by Molmil
Dengue virus RNA dependent RNA polymerase with residues from the NS5 linker region
Descriptor: DENGUE VIRUS TYPE 3 RNA DEPENDENT RNA POLYMERASE, ZINC ION
Authors:Lim, S.P, Lescar, J.
Deposit date:2013-08-09
Release date:2013-08-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Crystal Structure of the Dengue Virus Ns5 Polymerase Delineates Inter-Domain Amino Acids Residues that Enhance its Thermostability and De Novo Initiation Activities.
J.Biol.Chem., 288, 2013
3TTN
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BU of 3ttn by Molmil
Crystal structures of polyamine receptors SpuD and SpuE from Pseudomonas aeruginosa
Descriptor: Polyamine transport protein, SPERMIDINE
Authors:Lim, S.C, Wu, D.H, Song, H.W.
Deposit date:2011-09-15
Release date:2012-03-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Substrate Binding Specificity Revealed by the Crystal Structures of Polyamine Receptors SpuD and SpuE from Pseudomonas aeruginosa
J.Mol.Biol., 416, 2012
4B3G
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BU of 4b3g by Molmil
crystal structure of Ighmbp2 helicase in complex with RNA
Descriptor: DNA-BINDING PROTEIN SMUBP-2, RNA (5'-(AP*AP*AP*AP*AP*AP*AP*AP*AP)-3')
Authors:Lim, S.C, Song, H.
Deposit date:2012-07-24
Release date:2012-09-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The Ighmbp2 Helicase Structure Reveals the Molecular Basis for Disease-Causing Mutations in Dmsa1.
Nucleic Acids Res., 40, 2012
4B3F
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BU of 4b3f by Molmil
crystal structure of Ighmbp2 helicase
Descriptor: DNA-BINDING PROTEIN SMUBP-2, PHOSPHATE ION
Authors:Lim, S.C, Song, H.
Deposit date:2012-07-24
Release date:2012-09-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Ighmbp2 Helicase Structure Reveals the Molecular Basis for Disease-Causing Mutations in Dmsa1.
Nucleic Acids Res., 40, 2012
5T7C
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BU of 5t7c by Molmil
Solution structure of calcium free, myristoylated visinin-like protein 3
Descriptor: Hippocalcin-like protein 1
Authors:Lim, S, Ames, J.B.
Deposit date:2016-09-02
Release date:2017-07-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and Calcium Binding Properties of a Neuronal Calcium-Myristoyl Switch Protein, Visinin-Like Protein 3.
PLoS ONE, 11, 2016
4IMO
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BU of 4imo by Molmil
Crystal structure of wild type human Lipocalin PGDS in complex with substrate analog U44069
Descriptor: (5E)-7-{(1R,4S,5S,6R)-5-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-6-yl}hept-5-enoic acid, Lipocalin-type prostaglandin-D synthase, THIOCYANATE ION
Authors:Lim, S.M, Chen, D, Teo, H, Roos, A, Nyman, T, Tresaugues, L, Pervushin, K, Nordlund, P.
Deposit date:2013-01-03
Release date:2013-03-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural and dynamic insights into substrate binding and catalysis of human lipocalin prostaglandin D synthase.
J.Lipid Res., 54, 2013
4IMN
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BU of 4imn by Molmil
Crystal structure of wild type human Lipocalin PGDS bound with PEG MME 2000
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Lipocalin-type prostaglandin-D synthase
Authors:Lim, S.M, Chen, D, Teo, H, Roos, A, Nyman, T, Tresaugues, L, Pervushin, K, Nordlund, P.
Deposit date:2013-01-03
Release date:2013-03-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural and dynamic insights into substrate binding and catalysis of human lipocalin prostaglandin D synthase.
J.Lipid Res., 54, 2013
2NA0
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BU of 2na0 by Molmil
NMR structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) mutant V77E in a Ca2+-free/Mg2+-bound Activator State
Descriptor: Guanylyl cyclase-activating protein 1
Authors:Lim, S, Ames, J.B.
Deposit date:2015-12-16
Release date:2015-12-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) Mutant V77E in a Ca2+-free/Mg2+-bound Activator State.
J.Biol.Chem., 291, 2016
3E9K
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BU of 3e9k by Molmil
Crystal structure of Homo sapiens kynureninase-3-hydroxyhippuric acid inhibitor complex
Descriptor: 3-Hydroxyhippuric acid, Kynureninase, PYRIDOXAL-5'-PHOSPHATE
Authors:Lima, S, Kumar, S, Gawandi, V, Momany, C, Phillips, R.S.
Deposit date:2008-08-22
Release date:2008-12-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the Homo sapiens kynureninase-3-hydroxyhippuric acid inhibitor complex: insights into the molecular basis of kynureninase substrate specificity.
J.Med.Chem., 52, 2009
3FDD
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BU of 3fdd by Molmil
The Crystal Structure of the Pseudomonas dacunhae Aspartate-Beta-Decarboxylase Reveals a Novel Oligomeric Assembly for a Pyridoxal-5-Phosphate Dependent Enzyme
Descriptor: ACETATE ION, CHLORIDE ION, L-aspartate-beta-decarboxylase, ...
Authors:Lima, S, Sundararaju, B, Huang, C, Khristoforov, R, Momany, C, Phillips, R.S.
Deposit date:2008-11-25
Release date:2009-03-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The crystal structure of the Pseudomonas dacunhae aspartate-beta-decarboxylase dodecamer reveals an unknown oligomeric assembly for a pyridoxal-5'-phosphate-dependent enzyme.
J.Mol.Biol., 388, 2009
2HZP
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BU of 2hzp by Molmil
Crystal Structure of Homo Sapiens Kynureninase
Descriptor: Kynureninase, PYRIDOXAL-5'-PHOSPHATE
Authors:Lima, S, Khristoforov, R, Momany, C, Phillips, R.S.
Deposit date:2006-08-09
Release date:2006-11-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Homo sapiens Kynureninase.
Biochemistry, 46, 2007
1KFO
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BU of 1kfo by Molmil
CRYSTAL STRUCTURE OF AN RNA HELIX RECOGNIZED BY A ZINC-FINGER PROTEIN: AN 18 BASE PAIR DUPLEX AT 1.6 RESOLUTION
Descriptor: 5'-R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP*AP*(5BU)P*CP*CP*C)-3'
Authors:Lima, S, Hildenbrand, J, Korostelev, A, Hattman, S, Li, H.
Deposit date:2001-11-21
Release date:2001-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of an RNA helix recognized by a zinc-finger protein: an 18-bp duplex at 1.6 A resolution.
RNA, 8, 2002
4V0R
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BU of 4v0r by Molmil
DENGUE VIRUS FULL LENGTH NS5 COMPLEXED WITH GTP AND SAH
Descriptor: FORMIC ACID, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Zhao, Y, Soh, S, Zheng, J, Phoo, W.W, Swaminathan, K, Cornvik, T.C, Lim, S.P, Shi, P.-Y, Lescar, J, Vasudevan, S.G, Luo, D.
Deposit date:2014-09-18
Release date:2015-01-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Crystal Structure of the Dengue Virus Ns5 Protein Reveals a Novel Inter-Domain Interface Essential for Protein Flexibility and Virus Replication.
Plos Pathog., 11, 2015
3S44
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BU of 3s44 by Molmil
Crystal Structure of Pasteurella multocida sialyltransferase M144D mutant with CMP bound
Descriptor: Alpha-2,3/2,6-sialyltransferase/sialidase, CMP-3F(a)-Neu5Ac
Authors:Sugiarto, G, Lau, K, Li, Y, Lim, S, Ames, J.B, Le, D.-T, Fisher, A.J, Chen, X.
Deposit date:2011-05-18
Release date:2012-08-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Sialyltransferase Mutant with Decreased Donor Hydrolysis and Reduced Sialidase Activities for Directly Sialylating Lewis(x).
Acs Chem.Biol., 7, 2012
2XBM
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BU of 2xbm by Molmil
Crystal structure of the dengue virus methyltransferase bound to a 5'- capped octameric RNA
Descriptor: 5'-(*G3AP*GP*AP*AP*CP*CP*UP*GP*A)-3', GLYCEROL, NONSTRUCTURAL PROTEIN NS5, ...
Authors:Yap, L.J, Luo, D.H, Chung, K.Y, Lim, S.P, Bodenreider, C, Noble, C, Shi, P.Y, Lescar, J.
Deposit date:2010-04-13
Release date:2010-09-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of the Dengue Virus Methyltransferase Bound to a 5'-Capped Octameric RNA
Plos One, 5, 2010

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