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PDB: 69 results

6DN0
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BU of 6dn0 by Molmil
Retrofitted antibodies with stabilizing mutations: Herceptin scFv mutant with VH K30D and VL S52D.
Descriptor: FORMIC ACID, Human Variable Heavy Chain of Herceptin containing VH mutation K30D, Human Variable Light Chain of Herceptin containing VL mutation S52D
Authors:Langley, D.B, Roome, B, Christ, D.
Deposit date:2018-06-05
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Retrofitting antibodies with stabilizing mutations
To Be Published
4N1C
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BU of 4n1c by Molmil
Structural evidence for antigen receptor evolution
Descriptor: Lysozyme C, immunoglobulin variable light chain domain
Authors:Langley, D.B, Rouet, R, Roome, B, Stock, D, Christ, D.
Deposit date:2013-10-03
Release date:2014-10-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural reconstruction of protein ancestry.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4N1E
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BU of 4n1e by Molmil
Structural evidence for antigen receptor evolution
Descriptor: Lysozyme C, immunoglobulin variable light chain domain
Authors:Langley, D.B, Rouet, R, Stock, D, Christ, D.
Deposit date:2013-10-04
Release date:2014-10-29
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structural reconstruction of protein ancestry.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1W6G
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BU of 1w6g by Molmil
AGAO holoenzyme at 1.55 angstroms
Descriptor: COPPER (II) ION, GLYCEROL, PHENYLETHYLAMINE OXIDASE, ...
Authors:Langley, D.B, Duff, A.P, Juda, G.A, Shepard, E.M, Dooley, D.M, Freeman, H.C, Guss, J.M.
Deposit date:2004-08-18
Release date:2005-12-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The Copper Containing Amine Oxidase from Arthrobacter Globiformis: Refinement at 1.55 And 2.20 A Resolution in Two Crystal Forms.
Acta Crystallogr.,Sect.F, 62, 2006
4X4X
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BU of 4x4x by Molmil
Retrofitting antibodies with stabilizing mutations. Herceptin scFv mutant.
Descriptor: Human Variable Heavy Chain of Herceptin, Human Variable Light Chain of Herceptin
Authors:Langley, D.B, Roome, B, Christ, D.
Deposit date:2014-12-04
Release date:2015-12-23
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Retrofitting antibodies with stabilizing mutations
To Be Published
4X4Z
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BU of 4x4z by Molmil
Retrofitting antibodies with stabilizing mutations. Herceptin VL mutant F53D.
Descriptor: Herceptin VL domain with F53D mutation
Authors:Langley, D.B, Rouet, R, Christ, D.
Deposit date:2014-12-04
Release date:2015-12-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Retrofitting antibodies with stabilizing mutations
To Be Published
7RTA
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BU of 7rta by Molmil
Crystal structures of human PYY and NPY
Descriptor: 4A3B2-B Fab heavy chain, 4A3B2-B Fab light chain, Neuropeptide Y, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2021-08-12
Release date:2022-03-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of human neuropeptide Y (NPY) and peptide YY (PYY).
Neuropeptides, 92, 2022
7RT9
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BU of 7rt9 by Molmil
Crystal structures of human PYY and NPY
Descriptor: 4A3B2-A Fab heavy chain, 4A3B2-A Fab light chain, GLYCEROL, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2021-08-12
Release date:2022-03-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of human neuropeptide Y (NPY) and peptide YY (PYY).
Neuropeptides, 92, 2022
7MSQ
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BU of 7msq by Molmil
Complex between the Fab arm of AB-3467 and the SARS-CoV-2 receptor binding domain (RBD)
Descriptor: AB-3467 Fab Heavy Chain, AB-3467 Fab Light Chain, CHLORIDE ION, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2021-05-12
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Immunizations with diverse sarbecovirus receptor-binding domains elicit SARS-CoV-2 neutralizing antibodies against a conserved site of vulnerability.
Immunity, 54, 2021
2ZCG
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BU of 2zcg by Molmil
Structure and inhibition of orotidine 5'-phosphate decarboxylase from plasmodium falciparum
Descriptor: Orotidine 5'-phosphate decarboxylase
Authors:Langley, D.B, Guss, J.M, Shojaei, M, Christopherson, R.I.
Deposit date:2007-11-08
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.223 Å)
Cite:Structure and Inhibition of Orotidine 5'-Monophosphate Decarboxylase from Plasmodium falciparum
Biochemistry, 47, 2008
2ZP2
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BU of 2zp2 by Molmil
C-terminal domain of KipI from Bacillus subtilis
Descriptor: Kinase A inhibitor
Authors:Langley, D.B, Jacques, D.A.
Deposit date:2008-06-24
Release date:2009-01-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Histidine kinase regulation by a cyclophilin-like inhibitor
J.Mol.Biol., 384, 2008
7T72
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BU of 7t72 by Molmil
Epitope-based selection of SARS-CoV-2 neutralizing antibodies from convalescent patients
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody heavy chain, Antibody light chain, ...
Authors:Langley, D.B, Christ, D, Rouet, R.
Deposit date:2021-12-14
Release date:2022-12-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.177 Å)
Cite:Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients.
Nat Commun, 14, 2023
7KZB
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BU of 7kzb by Molmil
Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1antibodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Fab heavy chain of CR3014-C8 antibody, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2020-12-10
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1 antibodies.
Mabs, 13
7UEN
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BU of 7uen by Molmil
Genetic and structural basis of the human anti-alpha-galactosyl antibody response
Descriptor: M86 antibody Fab heavy chain, M86 antibody Fab light chain, PHOSPHATE ION, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2022-03-22
Release date:2022-06-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Genetic and structural basis of the human anti-alpha-galactosyl antibody response.
Proc.Natl.Acad.Sci.USA, 119, 2022
7UEL
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BU of 7uel by Molmil
Genetic and structural basis for the human anti-alpha-galactosyl antibody response
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Heavy chain Fab of antibody JEC1, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2022-03-22
Release date:2022-06-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Genetic and structural basis of the human anti-alpha-galactosyl antibody response.
Proc.Natl.Acad.Sci.USA, 119, 2022
7UEM
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BU of 7uem by Molmil
Genomic and structural basis for the human anti-alpha-galactosyl antibody response
Descriptor: CHLORIDE ION, Heavy chain Fab arm of antibody HKB7, Light chain Fab of antibody HKB7, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2022-03-22
Release date:2022-06-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.314 Å)
Cite:Genetic and structural basis of the human anti-alpha-galactosyl antibody response.
Proc.Natl.Acad.Sci.USA, 119, 2022
7KZC
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BU of 7kzc by Molmil
Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1antibodies
Descriptor: CHLORIDE ION, Fab heavy chain of m396-B10 antibody, Fab light chain of m396-B10 antibody
Authors:Langley, D.B, Christ, D.
Deposit date:2020-12-10
Release date:2021-02-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1 antibodies.
Mabs, 13
7KZA
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BU of 7kza by Molmil
Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1antibodies
Descriptor: CHLORIDE ION, Fab fragment heavy chain of anti-CoV2-RBD antibody variant CR3022-B6, Fab fragment light chain of anti-CoV2-RBD antibody variant CR3022-B6, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2020-12-10
Release date:2021-02-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1 antibodies.
Mabs, 13
8CWI
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BU of 8cwi by Molmil
Fab arm of antibody 10G4 bound to CoV-2 receptor binding domain (RBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Heavy chain of Fab arm of antibody 10G4, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2022-05-19
Release date:2023-05-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.873 Å)
Cite:Neutralization of CoV-2 omicron lineages by affinity-matured class 5 antibodies
To Be Published
8CWK
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BU of 8cwk by Molmil
Fab arm of antibodies 4G1-C2 and 10G4 bound to CoV-2 receptor binding domain (RBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Heavy chain of Fab arm of antibody 10G4, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2022-05-19
Release date:2023-05-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.368 Å)
Cite:Neutralization of CoV-2 omicron sublineages by affinity-matured class 5 antibodies
To Be Published
8CWJ
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BU of 8cwj by Molmil
Fab arms of antibodies 4C12-B12 and CR3022 bound to pangolin receptor binding domain (pRBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2022-05-19
Release date:2023-05-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.449 Å)
Cite:Neutralization of CoV-2 omicron lineages by affinity-matured class 5 antibodies
To Be Published
8DXU
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BU of 8dxu by Molmil
Fab arms of antibodies GAR03 and 10G4 bound to the receptor binding domain of SARS-CoV-2 in a 1:1:1 complex.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Heavy chain of Fab arm of antibody 10G4, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2022-08-03
Release date:2023-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.728 Å)
Cite:Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients.
Nat Commun, 14, 2023
8DXT
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BU of 8dxt by Molmil
Fab arm of antibody GAR12 bound to the receptor binding domain of SARS-CoV-2.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Fab arm of antibody GAR12, Light chain of Fab arm of antibody GAR12, ...
Authors:Langley, D.B, Christ, D, Henry, J.Y.
Deposit date:2022-08-03
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients.
Nat Commun, 14, 2023
1DUV
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BU of 1duv by Molmil
CRYSTAL STRUCTURE OF E. COLI ORNITHINE TRANSCARBAMOYLASE COMPLEXED WITH NDELTA-L-ORNITHINE-DIAMINOPHOSPHINYL-N-SULPHONIC ACID (PSORN)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, NDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE, ORNITHINE TRANSCARBAMOYLASE
Authors:Langley, D.B, Templeton, M.D, Fields, B.A, Mitchell, R.E, Collyer, C.A.
Deposit date:2000-01-18
Release date:2000-07-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mechanism of inactivation of ornithine transcarbamoylase by Ndelta -(N'-Sulfodiaminophosphinyl)-L-ornithine, a true transition state analogue? Crystal structure and implications for catalytic mechanism.
J.Biol.Chem., 275, 2000
6P4B
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BU of 6p4b by Molmil
HyHEL10 fab variant HyHEL10-4x (heavy chain mutations L4F, Y33H, S56N, and Y58F) bound to hen egg lysozyme variant HEL2x-flex (mutations R21Q, R73E, C76S, and C94S)
Descriptor: CHLORIDE ION, HyHEL10 Fab heavy chain, HyHEL10 Fab light chain, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2019-05-27
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conformational diversity facilitates antibody mutation trajectories and discrimination between foreign and self-antigens.
Proc.Natl.Acad.Sci.USA, 117, 2020

 

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PDB entries from 2024-06-12

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