4UA8
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4UAC
| EUR_01830 with acarbose | Descriptor: | 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Carbohydrate ABC transporter substrate-binding protein, ... | Authors: | Koropatkin, N.M, Orlovsky, N.I. | Deposit date: | 2014-08-08 | Release date: | 2014-12-10 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale. Mol.Microbiol., 95, 2015
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6DHT
| Bacteroides ovatus GH9 Bacova_02649 | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... | Authors: | Koropatkin, N.M, Foley, M.H. | Deposit date: | 2018-05-21 | Release date: | 2019-04-03 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.42 Å) | Cite: | A Cell-Surface GH9 Endo-Glucanase Coordinates with Surface Glycan-Binding Proteins to Mediate Xyloglucan Uptake in the Gut Symbiont Bacteroides ovatus. J. Mol. Biol., 431, 2019
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6DK2
| Bacteroidetes AC2a SusD-like | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ... | Authors: | Koropatkin, N.M. | Deposit date: | 2018-05-28 | Release date: | 2018-08-01 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (2.02 Å) | Cite: | To Be Published To Be Published
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1WVC
| alpha-D-glucose-1-phosphate cytidylyltransferase complexed with CTP | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, Glucose-1-phosphate cytidylyltransferase, MAGNESIUM ION, ... | Authors: | Koropatkin, N.M, Cleland, W.W, Holden, H.M. | Deposit date: | 2004-12-14 | Release date: | 2005-01-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Kinetic and structural analysis of alpha-D-Glucose-1-phosphate cytidylyltransferase from Salmonella typhi. J.Biol.Chem., 280, 2005
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1WVG
| Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi | Descriptor: | ADENOSINE-5-DIPHOSPHORIBOSE, CDP-glucose 4,6-dehydratase, CYTIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE | Authors: | Koropatkin, N.M, Holden, H.M. | Deposit date: | 2004-12-15 | Release date: | 2005-01-26 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi complexed with CDP-D-xylose. Acta Crystallogr.,Sect.D, 61, 2005
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1TZF
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1ORR
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6NE9
| Bacteroides intestinalis acetyl xylan esterase (BACINT_01039) | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | Authors: | Koropatkin, N.M, Pereira, G.V, Cann, I. | Deposit date: | 2018-12-17 | Release date: | 2019-12-25 | Last modified: | 2021-01-27 | Method: | X-RAY DIFFRACTION (1.738 Å) | Cite: | Degradation of complex arabinoxylans by human colonic Bacteroidetes Nat Commun, 2021
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5WH8
| Cellulase Cel5C_n | Descriptor: | 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, PENTAETHYLENE GLYCOL, ... | Authors: | Koropatkin, N.M, Pope, P.B, Naas, A.E. | Deposit date: | 2017-07-15 | Release date: | 2018-03-14 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (1.57 Å) | Cite: | "Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system. Microbiome, 6, 2018
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5VOL
| Bacint_04212 ferulic acid esterase | Descriptor: | CALCIUM ION, ISOPROPYL ALCOHOL, Putative esterase | Authors: | Koropatkin, N.M, Cann, I, Mackie, R.I. | Deposit date: | 2017-05-03 | Release date: | 2017-07-19 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.98 Å) | Cite: | Biochemical and Structural Analyses of Two Cryptic Esterases in Bacteroides intestinalis and their Synergistic Activities with Cognate Xylanases. J. Mol. Biol., 429, 2017
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5J5U
| Fjoh_4561 chitin-binding protein | Descriptor: | RagB/SusD domain protein | Authors: | Koropatkin, N.M. | Deposit date: | 2016-04-03 | Release date: | 2017-02-08 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin. Biotechnol Biofuels, 9, 2016
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5J90
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3K8K
| Crystal structure of SusG | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, Alpha-amylase, ... | Authors: | Koropatkin, N.M, Smith, T.J. | Deposit date: | 2009-10-14 | Release date: | 2010-03-02 | Last modified: | 2017-11-01 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | SusG: A Unique Cell-Membrane-Associated alpha-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules. Structure, 18, 2010
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3K8L
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3K8M
| Crystal structure of SusG with acarbose | Descriptor: | 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Koropatkin, N.M, Smith, T.J. | Deposit date: | 2009-10-14 | Release date: | 2010-03-02 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | SusG: A Unique Cell-Membrane-Associated alpha-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules. Structure, 18, 2010
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6MOT
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6MLY
| Bifunctional GH43-CE Bacteroides eggerthii, BACEGG_01304 | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, Bifunctional GH43-CE protein, ... | Authors: | Koropatkin, N.M, Pereira, G.V, Cann, I. | Deposit date: | 2018-09-28 | Release date: | 2019-10-02 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Degradation of complex arabinoxylans by human colonic Bacteroidetes Nat Commun, 2021
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6MOU
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5E75
| Crystal structure of Bacova_02651 | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... | Authors: | Koropatkin, N.M. | Deposit date: | 2015-10-11 | Release date: | 2016-05-04 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (1.36 Å) | Cite: | Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont. Mbio, 7, 2016
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5E7H
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6DMF
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5E76
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6E57
| Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-B in complex with mixed-linkage heptasaccharide | Descriptor: | 1,2-ETHANEDIOL, PHOSPHATE ION, SODIUM ION, ... | Authors: | Koropatkin, N.M, Schnizlein, M, Bahr, C.M.E. | Deposit date: | 2018-07-19 | Release date: | 2019-05-29 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.71 Å) | Cite: | Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus. Cell.Mol.Life Sci., 76, 2019
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4FEM
| Structure of SusE with alpha-cyclodextrin | Descriptor: | 1,2-ETHANEDIOL, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), Outer membrane protein SusE | Authors: | Koropatkin, N.M, Cameron, E.A, Martens, E.C. | Deposit date: | 2012-05-30 | Release date: | 2012-08-29 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism. J.Biol.Chem., 287, 2012
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