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PDB: 36 results

8QMH
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Crystal structure of RNA G2C4 repeats in complex with small synthetic molecule ANP77
Descriptor: 3-(7-azanyl-1,8-naphthyridin-2-yl)-2-[(7-azanyl-1,8-naphthyridin-2-yl)methyl]-~{N}-(3-azanylpropyl)propanamide, CHLORIDE ION, RNA (5'-R(*GP*GP*CP*CP*CP*C)-3')
Authors:Kiliszek, A, Ryczek, M, Blaszczyk, L.
Deposit date:2023-09-22
Release date:2024-05-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Antisense RNA C9orf72 Hexanucleotide Repeat Associated With ALS/FTD Forms A Triplex-Like Structure and Binds Small Synthetic Molecule ANP77
To Be Published
5MWI
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BU of 5mwi by Molmil
Crystal structure of G(CUG)8G duplex
Descriptor: RNA G(CUG)8C duplex, SULFATE ION
Authors:Kiliszek, A, Blaszczyk, L, Rypniewski, W.
Deposit date:2017-01-18
Release date:2017-03-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Stabilization of RNA hairpins using non-nucleotide linkers and circularization.
Nucleic Acids Res., 45, 2017
4XW0
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BU of 4xw0 by Molmil
Crystal structure of (GCCU(G-LNA)CCUGC)2 duplex
Descriptor: RNA (5'-R(*GP*CP*CP*UP*(LCG)P*CP*CP*UP*GP*C)-3'), SULFATE ION
Authors:Kiliszek, A, Banaszak, K, Rypniewski, W.
Deposit date:2015-01-28
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation.
Rna, 22, 2016
4XW1
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BU of 4xw1 by Molmil
Crystal structure of (GCCU(G-LNA)CCUG)2 duplex
Descriptor: RNA (5'-R(*GP*CP*CP*UP*(LCG)P*CP*CP*UP*G)-3')
Authors:Kiliszek, A, Banaszak, K, Rypniewski, W.
Deposit date:2015-01-28
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation.
Rna, 22, 2016
3NJ6
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BU of 3nj6 by Molmil
0.95 A resolution X-ray structure of (GGCAGCAGCC)2
Descriptor: 5'-R(*GP*GP*CP*AP*GP*CP*AP*GP*CP*C)-3', SULFATE ION
Authors:Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W.
Deposit date:2010-06-17
Release date:2010-08-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Atomic resolution structure of CAG RNA repeats: structural insights and implications for the trinucleotide repeat expansion diseases.
Nucleic Acids Res., 38, 2010
3NJ7
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1.9 A resolution X-ray structure of (GGCAGCAGCC)2
Descriptor: 5'-R(*GP*GP*CP*AP*GP*CP*AP*GP*CP*C)-3', SULFATE ION
Authors:Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W.
Deposit date:2010-06-17
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Atomic resolution structure of CAG RNA repeats: structural insights and implications for the trinucleotide repeat expansion diseases.
Nucleic Acids Res., 38, 2010
3GLP
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BU of 3glp by Molmil
1.23 A resolution X-ray structure of (GCUGCUGC)2
Descriptor: 5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3', GLYCEROL, SULFATE ION
Authors:Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W.
Deposit date:2009-03-12
Release date:2009-05-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Structural insights into CUG repeats containing the 'stretched U-U wobble': implications for myotonic dystrophy.
Nucleic Acids Res., 37, 2009
5EMG
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Crystal structures of PNA p(GCTGCTGC)2 duplex containing T-T mismatches
Descriptor: CHLORIDE ION, GPN-CPN-TPN-GPN-CPN-TPN-GPN-CPN, SODIUM ION
Authors:Kiliszek, A, Banaszak, K, Dauter, Z, Rypniewski, W.
Deposit date:2015-11-06
Release date:2016-01-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs.
Nucleic Acids Res., 44, 2016
4E59
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BU of 4e59 by Molmil
Crystal structure of GCCGCCGC duplex
Descriptor: RNA duplex containing CCG repeats
Authors:Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W.
Deposit date:2012-03-14
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystallographic characterization of CCG repeats.
Nucleic Acids Res., 40, 2012
3GM7
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BU of 3gm7 by Molmil
1.58 A resolution X-ray structure of (CUG)6
Descriptor: 5'-R(*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*G)-3'
Authors:Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W.
Deposit date:2009-03-13
Release date:2009-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural insights into CUG repeats containing the 'stretched U-U wobble': implications for myotonic dystrophy.
Nucleic Acids Res., 37, 2009
5EMF
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BU of 5emf by Molmil
Crystal structure of RNA r(GCUGCUGC) with antisense PNA p(GCAGCAGC)
Descriptor: CHLORIDE ION, RNA (5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3'), antisense PNA p(GCAGCAGC)
Authors:Kiliszek, A, Banaszak, K, Dauter, Z, Rypniewski, W.
Deposit date:2015-11-06
Release date:2016-01-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs.
Nucleic Acids Res., 44, 2016
5EME
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BU of 5eme by Molmil
Complex of RNA r(GCAGCAGC) with antisense PNA p(CTGCTGC)
Descriptor: Antisense PNA strand, CHLORIDE ION, RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
Authors:Kiliszek, A, Banaszak, K, Dauter, Z, Rypniewski, W.
Deposit date:2015-11-06
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs.
Nucleic Acids Res., 44, 2016
6QIS
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BU of 6qis by Molmil
Crystal structure of CAG repeats with synthetic CMBL3a compound (model II)
Descriptor: CMBL3a, RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3'), SULFATE ION
Authors:Kiliszek, A, Blaszczyk, L, Rypniewski, W, Nakatani, K.
Deposit date:2019-01-21
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats.
Nucleic Acids Res., 47, 2019
6QIQ
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BU of 6qiq by Molmil
Crystal structure of seleno-derivative CAG repeats with synthetic CMBL3a compound
Descriptor: CMBL3a, RNA (5'-R(*GP*CP*AP*G)-D(P*(CSL))-R(P*AP*GP*C)-3')
Authors:Kiliszek, A, Blaszczyk, L, Rypniewski, W, Micura, R, Nakatani, K.
Deposit date:2019-01-21
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.519 Å)
Cite:Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats.
Nucleic Acids Res., 47, 2019
6QIT
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BU of 6qit by Molmil
Crystal structure of CAG repeats with synthetic CMBL3b compound
Descriptor: CMBL3a, RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
Authors:Kiliszek, A, Blaszczyk, L, Rypniewski, W, Nakatani, K.
Deposit date:2019-01-21
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats.
Nucleic Acids Res., 47, 2019
4E58
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BU of 4e58 by Molmil
Crystal structure of GCC(LCG)CCGC duplex containing LNA residue
Descriptor: RNA duplex containing CCG repeats, SULFATE ION
Authors:Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, R.
Deposit date:2012-03-14
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Crystallographic characterization of CCG repeats.
Nucleic Acids Res., 40, 2012
6QIV
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BU of 6qiv by Molmil
Crystal structure of seleno-derivative CAG repeats with synthetic CMBL4 compound
Descriptor: CMBL4, RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
Authors:Kiliszek, A, Blaszczyk, L, Rypniewski, W, Nakatani, K.
Deposit date:2019-01-21
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats.
Nucleic Acids Res., 47, 2019
6QIR
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BU of 6qir by Molmil
Crystal structure of CAG repeats with synthetic CMBL3a compound (model I)
Descriptor: CMBL3a, RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
Authors:Kiliszek, A, Blaszczyk, L, Rypniewski, W, Nakatani, K.
Deposit date:2019-01-21
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.531 Å)
Cite:Structural insights into synthetic ligands targeting A-A pairs in disease-related CAG RNA repeats.
Nucleic Acids Res., 47, 2019
3R1C
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BU of 3r1c by Molmil
Crystal structure of GCGGCGGC duplex
Descriptor: RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3'), SULFATE ION
Authors:Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W.
Deposit date:2011-03-10
Release date:2011-06-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.0531 Å)
Cite:Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome.
Nucleic Acids Res., 39, 2011
8AMM
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BU of 8amm by Molmil
Crystal structure of AUGUGGCAU duplex with cesium ions
Descriptor: CESIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3')
Authors:Kiliszek, A, Rypniewski, W.
Deposit date:2022-08-03
Release date:2022-11-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
8AML
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BU of 8aml by Molmil
Crystal structure of AUGUGGCAU duplex with cadmium ions
Descriptor: CADMIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3')
Authors:Kiliszek, A, Rypniewski, W.
Deposit date:2022-08-03
Release date:2022-11-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
8AMN
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BU of 8amn by Molmil
Crystal structure of AUGUGGCAU duplex with strontium ions
Descriptor: RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3'), STRONTIUM ION
Authors:Kiliszek, A, Rypniewski, W.
Deposit date:2022-08-03
Release date:2022-11-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
6HNU
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Crystal structure of the aminotransferase Aro8 from C. Albicans with ligands
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Aromatic amino acid aminotransferase I, ...
Authors:Kiliszek, A, Rzad, K, Rypniewski, W, Milewski, S, Gabriel, I.
Deposit date:2018-09-17
Release date:2019-02-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of aminotransferases Aro8 and Aro9 from Candida albicans and structural insights into their properties.
J.Struct.Biol., 205, 2019
6HNB
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BU of 6hnb by Molmil
Crystal structure of aminotransferase Aro8 from Candida albicans
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Aromatic amino acid aminotransferase I, CHLORIDE ION, ...
Authors:Kiliszek, A, Rzad, K, Rypniewski, W, Milewski, S, Gabriel, I.
Deposit date:2018-09-14
Release date:2019-02-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structures of aminotransferases Aro8 and Aro9 from Candida albicans and structural insights into their properties.
J.Struct.Biol., 205, 2019
6HNV
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BU of 6hnv by Molmil
Crystal structure of aminotransferase Aro9 from C. Albicans with ligands
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINOHEXANEDIOIC ACID, 2-OXOADIPIC ACID, ...
Authors:Kiliszek, A, Rzad, K, Rypniewski, W, Milewski, S, Gabriel, I.
Deposit date:2018-09-17
Release date:2019-02-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of aminotransferases Aro8 and Aro9 from Candida albicans and structural insights into their properties.
J.Struct.Biol., 205, 2019

 

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