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PDB: 137 results

3KTT
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Atomic model of bovine TRiC CCT2(beta) subunit derived from a 4.0 Angstrom cryo-EM map
Descriptor: T-complex protein 1 subunit beta
Authors:Cong, Y, Baker, M.L, Ludtke, S.J, Frydman, J, Chiu, W.
Deposit date:2009-11-25
Release date:2010-03-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4 Å)
Cite:4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement.
Proc.Natl.Acad.Sci.USA, 107, 2010
4A0V
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BU of 4a0v by Molmil
model refined against the Symmetry-free cryo-EM map of TRiC-AMP-PNP
Descriptor: T-COMPLEX PROTEIN 1 SUBUNIT BETA
Authors:Cong, Y, Schroder, G.F, Meyer, A.S, Jakana, J, Ma, B, Dougherty, M.T, Schmid, M.F, Reissmann, S, Levitt, M, Ludtke, S.L, Frydman, J, Chiu, W.
Deposit date:2011-09-13
Release date:2012-02-15
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (10.7 Å)
Cite:Symmetry-Free Cryo-Em Structures of the Chaperonin Tric Along its ATPase-Driven Conformational Cycle.
Embo J., 31, 2012
3B63
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BU of 3b63 by Molmil
Actin filament model in the extended form of acromsomal bundle in the Limulus sperm
Descriptor: Actin
Authors:Cong, Y, Topf, M, Sali, A, Matsudaira, P, Dougherty, M, Chiu, W, Schmid, M.F.
Deposit date:2007-10-26
Release date:2008-11-18
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Crystallographic conformers of actin in a biologically active bundle of filaments.
J.Mol.Biol., 375, 2008
3B5U
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BU of 3b5u by Molmil
Actin filament model from extended form of acromsomal bundle in the Limulus sperm
Descriptor: Actin, alpha skeletal muscle
Authors:Cong, Y, Topf, M, Sali, A, Matsudaira, P, Dougherty, M, Chiu, W, Schmid, M.F.
Deposit date:2007-10-26
Release date:2008-04-15
Last modified:2024-02-21
Method:ELECTRON CRYSTALLOGRAPHY (9.5 Å)
Cite:Crystallographic conformers of actin in a biologically active bundle of filaments
J.Mol.Biol., 375, 2008
3IXV
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BU of 3ixv by Molmil
Scorpion Hemocyanin resting state pseudo atomic model built based on cryo-EM density map
Descriptor: Hemocyanin AA6 chain
Authors:Cong, Y, Zhang, Q, Woolford, D, Schweikardt, T, Khant, H, Ludtke, S, Chiu, W, Decker, H.
Deposit date:2009-02-13
Release date:2009-06-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Structural Mechanism of SDS-Induced Enzyme Activity of Scorpion Hemocyanin Revealed by Electron Cryomicroscopy.
Structure, 17, 2009
3IXW
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BU of 3ixw by Molmil
Scorpion Hemocyanin activated state pseudo atomic model built based on cryo-EM density map
Descriptor: Hemocyanin AA6 chain
Authors:Cong, Y, Zhang, Q, Woolford, D, Schweikardt, T, Khant, H, Ludtke, S, Chiu, W, Decker, H.
Deposit date:2009-02-13
Release date:2009-06-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Structural Mechanism of SDS-Induced Enzyme Activity of Scorpion Hemocyanin Revealed by Electron Cryomicroscopy.
Structure, 17, 2009
3IYG
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BU of 3iyg by Molmil
Ca model of bovine TRiC/CCT derived from a 4.0 Angstrom cryo-EM map
Descriptor: T-complex protein 1 subunit, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ...
Authors:Cong, Y, Baker, M.L, Ludtke, S.J, Frydman, J, Chiu, W.
Deposit date:2009-11-28
Release date:2010-03-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4 Å)
Cite:4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement.
Proc.Natl.Acad.Sci.USA, 107, 2010
6J30
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BU of 6j30 by Molmil
yeast proteasome in Ub-engaged state (C2)
Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ...
Authors:Cong, Y.
Deposit date:2019-01-03
Release date:2019-03-20
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J2N
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BU of 6j2n by Molmil
yeast proteasome in substrate-processing state (C3-b)
Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ...
Authors:Cong, Y.
Deposit date:2019-01-02
Release date:2019-03-20
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J2C
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BU of 6j2c by Molmil
Yeast proteasome in translocation competent state (C3-a)
Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ...
Authors:Cong, Y.
Deposit date:2019-01-01
Release date:2019-03-13
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J2X
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BU of 6j2x by Molmil
Yeast proteasome in resting state (C1-a)
Descriptor: 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG, 26S PROTEASOME REGULATORY SUBUNIT RPN5, 26S proteasome complex subunit SEM1, ...
Authors:Cong, Y.
Deposit date:2019-01-03
Release date:2019-03-13
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
6J2Q
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BU of 6j2q by Molmil
Yeast proteasome in Ub-accepted state (C1-b)
Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ...
Authors:Cong, Y.
Deposit date:2019-01-02
Release date:2019-03-13
Last modified:2019-04-10
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Snapshots of 26S Proteasome Reveal Tetraubiquitin-Induced Conformations.
Mol. Cell, 73, 2019
4A0O
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BU of 4a0o by Molmil
Symmetry-free cryo-EM map of TRiC in the nucleotide-free (apo) state
Descriptor: T-COMPLEX PROTEIN 1 SUBUNIT BETA
Authors:Cong, Y, Schroder, G.F, Meyer, A.S, Jakana, J, Ma, B, Dougherty, M.T, Schmid, M.F, Reissmann, S, Levitt, M, Ludtke, S.L, Frydman, J, Chiu, W.
Deposit date:2011-09-10
Release date:2012-02-15
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (10.5 Å)
Cite:Symmetry-Free Cryo-Em Structures of the Chaperonin Tric Along its ATPase-Driven Conformational Cycle.
Embo J., 31, 2012
4A0W
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BU of 4a0w by Molmil
model built against symmetry-free cryo-EM map of TRiC-ADP-AlFx
Descriptor: T-COMPLEX PROTEIN 1 SUBUNIT BETA
Authors:Cong, Y, Schroder, G.F, Meyer, A.S, Jakana, J, Ma, B, Dougherty, M.T, Schmid, M.F, Reissmann, S, Levitt, M, Ludtke, S.L, Frydman, J, Chiu, W.
Deposit date:2011-09-13
Release date:2012-02-15
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (13.9 Å)
Cite:Symmetry-Free Cryo-Em Structures of the Chaperonin Tric Along its ATPase-Driven Conformational Cycle.
Embo J., 31, 2012
4A13
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BU of 4a13 by Molmil
model refined against symmetry-free cryo-EM map of TRiC-ADP
Descriptor: T-COMPLEX PROTEIN 1 SUBUNIT BETA
Authors:Cong, Y, Schroder, G.F, Meyer, A.S, Jakana, J, Ma, B, Dougherty, M.T, Schmid, M.F, Reissmann, S, Levitt, M, Ludtke, S.L, Frydman, J, Chiu, W.
Deposit date:2011-09-13
Release date:2012-02-15
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (11.3 Å)
Cite:Symmetry-Free Cryo-Em Structures of the Chaperonin Tric Along its ATPase-Driven Conformational Cycle.
Embo J., 31, 2012
7X3U
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BU of 7x3u by Molmil
cryo-EM structure of human TRiC-ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-03-01
Release date:2023-06-07
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Pathway and mechanism of tubulin folding mediated by TRiC/CCT along its ATPase cycle revealed using cryo-EM.
Commun Biol, 6, 2023
7X3J
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BU of 7x3j by Molmil
Cryo-EM structure of human TRiC-tubulin-S2
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-03-01
Release date:2023-06-07
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Pathway and mechanism of tubulin folding mediated by TRiC/CCT along its ATPase cycle revealed using cryo-EM.
Commun Biol, 6, 2023
7X6Q
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BU of 7x6q by Molmil
cryo-EM structure of human TRiC-ATP-closed state
Descriptor: T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, T-complex protein 1 subunit delta, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-03-08
Release date:2023-06-07
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Pathway and mechanism of tubulin folding mediated by TRiC/CCT along its ATPase cycle revealed using cryo-EM.
Commun Biol, 6, 2023
7X7Y
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BU of 7x7y by Molmil
Cryo-EM structure of Human TRiC-ATP-open state
Descriptor: T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, T-complex protein 1 subunit delta, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-03-10
Release date:2023-06-07
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Pathway and mechanism of tubulin folding mediated by TRiC/CCT along its ATPase cycle revealed using cryo-EM.
Commun Biol, 6, 2023
7Y7M
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BU of 7y7m by Molmil
The structure of coxsackievirus A16 mature virion in complex with Fab 8C4
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-06-22
Release date:2022-08-24
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Molecular mechanism of antibody neutralization of coxsackievirus A16.
Nat Commun, 13, 2022
7YMS
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BU of 7yms by Molmil
Cryo-EM structure of Coxsackievirus A16 in complex with a neutralizing antibody 9B5
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-07-29
Release date:2022-08-24
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular mechanism of antibody neutralization of coxsackievirus A16.
Nat Commun, 13, 2022
7YRF
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BU of 7yrf by Molmil
Cryo-EM structure of compact CA16 empty particle in complex with a neutralizing antibody 8C4
Descriptor: Capsid protein VP3, Genome polyprotein, Light chain of chain, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-08-09
Release date:2022-09-14
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Molecular mechanism of antibody neutralization of coxsackievirus A16.
Nat Commun, 13, 2022
7YRH
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BU of 7yrh by Molmil
Cryo-EM structure of compact coxsackievirus A16 empty particle in complex with a neutralizing antibody 9B5
Descriptor: Capsid protein VP1, Capsid protein VP3, Genome polyprotein, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-08-10
Release date:2022-09-14
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Molecular mechanism of antibody neutralization of coxsackievirus A16.
Nat Commun, 13, 2022
7YV7
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BU of 7yv7 by Molmil
Cryo-EM structure of expanded coxsackievirus A16 empty particle in complex with antibody 9B5
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-08-18
Release date:2022-10-19
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Molecular mechanism of antibody neutralization of coxsackievirus A16.
Nat Commun, 13, 2022
7YV2
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BU of 7yv2 by Molmil
Cryo-EM structure of expanded coxsackievirus A16 empty particle after incubation with 8C4 antibody
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Cong, Y, Liu, C.X.
Deposit date:2022-08-18
Release date:2022-10-19
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Molecular mechanism of antibody neutralization of coxsackievirus A16.
Nat Commun, 13, 2022

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