Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4NWN
DownloadVisualize
BU of 4nwn by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T32-28
Descriptor: Propanediol utilization: polyhedral bodies pduT, Uncharacterized protein
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4NWP
DownloadVisualize
BU of 4nwp by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group R32
Descriptor: AMMONIUM ION, Putative uncharacterized protein, SULFATE ION, ...
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4NWR
DownloadVisualize
BU of 4nwr by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T33-28
Descriptor: Macrophage migration inhibitory factor-like protein, integron gene cassette protein
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4NWO
DownloadVisualize
BU of 4nwo by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T33-15
Descriptor: CALCIUM ION, Chorismate mutase AroH, Molybdenum cofactor biosynthesis protein MogA
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
8SKW
DownloadVisualize
BU of 8skw by Molmil
MicroED structure of d(CGCGCG)2 Z-DNA
Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE
Authors:Haymaker, A, Bardin, A.A, Martynowycz, M.W, Nannenga, B.L.
Deposit date:2023-04-20
Release date:2023-08-16
Last modified:2023-12-20
Method:ELECTRON CRYSTALLOGRAPHY (1.1 Å)
Cite:Structure determination of a DNA crystal by MicroED.
Structure, 31, 2023
3VCD
DownloadVisualize
BU of 3vcd by Molmil
Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group R32
Descriptor: CHLORIDE ION, Propanediol utilization polyhedral body protein PduT, SULFATE ION
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-03
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
5O0U
DownloadVisualize
BU of 5o0u by Molmil
Crystal structure of tarantula venom peptide Protoxin-II
Descriptor: 1,2-ETHANEDIOL, Beta/omega-theraphotoxin-Tp2a, CHLORIDE ION
Authors:Tabor, A, McCarthy, S, Reyes, F.E.
Deposit date:2017-05-17
Release date:2017-09-13
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:The Role of Disulfide Bond Replacements in Analogues of the Tarantula Toxin ProTx-II and Their Effects on Inhibition of the Voltage-Gated Sodium Ion Channel Nav1.7.
J.Am.Chem.Soc., 139, 2017
4DDF
DownloadVisualize
BU of 4ddf by Molmil
Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4
Descriptor: CHLORIDE ION, Propanediol utilization polyhedral body protein PduT, SULFATE ION
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-18
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
4DCL
DownloadVisualize
BU of 4dcl by Molmil
Computationally Designed Self-assembling tetrahedron protein, T308, Crystallized in space group F23
Descriptor: Putative acetyltransferase SACOL2570
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-17
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
4EGG
DownloadVisualize
BU of 4egg by Molmil
Computationally Designed Self-assembling tetrahedron protein, T310
Descriptor: GLYCEROL, Putative acetyltransferase SACOL2570
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-03-30
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
6V8R
DownloadVisualize
BU of 6v8r by Molmil
Proteinase K Determined by MicroED Phased by ARCIMBOLDO_SHREDDER
Descriptor: CALCIUM ION, Proteinase K
Authors:Richards, L.S, Martynowycz, M.W, Sawaya, M.R, Millan, C.
Deposit date:2019-12-11
Release date:2020-08-12
Method:ELECTRON CRYSTALLOGRAPHY (1.6 Å)
Cite:Fragment-based determination of a proteinase K structure from MicroED data using ARCIMBOLDO_SHREDDER
Acta Crystallogr.,Sect.D, 76, 2020
4RIK
DownloadVisualize
BU of 4rik by Molmil
Amyloid forming segment, AVVTGVTAV, from the NAC domain of Parkinson's disease protein alpha-synuclein, residues 69-77
Descriptor: Alpha-synuclein
Authors:Guenther, E.L, Sawaya, M.R, Ivanova, M, Eisenberg, D.S.
Deposit date:2014-10-06
Release date:2015-08-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.854 Å)
Cite:Structure of the toxic core of alpha-synuclein from invisible crystals.
Nature, 525, 2015
3NEK
DownloadVisualize
BU of 3nek by Molmil
Crystal structure of a nitrogen repressor-like protein MJ0159 from Methanococcus jannaschii
Descriptor: GLYCEROL, nitrogen repressor-like protein MJ0159
Authors:Bonanno, J.B, Patskovsky, Y, Malashkevich, V, Ozyurt, S, Dickey, M, Wu, B, Maletic, M, Rodgers, L, Koss, J, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-06-09
Release date:2010-06-23
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR.
Structure, 18, 2010
5V5B
DownloadVisualize
BU of 5v5b by Molmil
KVQIINKKLD, Structure of the amyloid spine from microtubule associated protein tau Repeat 2
Descriptor: Microtubule-associated protein tau
Authors:Seidler, P.M, Sawaya, M.R, Rodriguez, J.A, Eisenberg, D.S, Cascio, D, Boyer, D.R.
Deposit date:2017-03-13
Release date:2018-02-07
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (1.5 Å)
Cite:Structure-based inhibitors of tau aggregation.
Nat Chem, 10, 2018
5V5C
DownloadVisualize
BU of 5v5c by Molmil
VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2
Descriptor: Microtubule-associated protein tau
Authors:Seidler, P.M, Sawaya, M.R, Rodriguez, J.A, Eisenberg, D.S, Cascio, D, Boyer, D.R.
Deposit date:2017-03-14
Release date:2018-02-07
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (1.25 Å)
Cite:Structure-based inhibitors of tau aggregation.
Nat Chem, 10, 2018
5W50
DownloadVisualize
BU of 5w50 by Molmil
Crystal structure of the segment, LIIKGI, from the RRM2 of TDP-43, residues 248-253
Descriptor: TAR DNA-binding protein 43
Authors:Guenther, E.L, Trinh, H, Sawaya, M.R, Eisenberg, D.S.
Deposit date:2017-06-13
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.
Nat. Struct. Mol. Biol., 25, 2018
5W52
DownloadVisualize
BU of 5w52 by Molmil
MicroED structure of the segment, DLIIKGISVHI, from the RRM2 of TDP-43, residues 247-257
Descriptor: TAR DNA-binding protein 43
Authors:Guenther, E.L, Sawaya, M.R, Cascio, D, Eisenberg, D.S.
Deposit date:2017-06-13
Release date:2018-02-21
Last modified:2024-04-03
Method:ELECTRON CRYSTALLOGRAPHY (1.4 Å)
Cite:Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.
Nat. Struct. Mol. Biol., 25, 2018
5W7V
DownloadVisualize
BU of 5w7v by Molmil
CryoEM structure of the segment, DLIIKGISVHI, assembled into a triple-helical fibril
Descriptor: TAR DNA-binding protein 43
Authors:Guenther, E.L, Ge, P, Eisenberg, D.S.
Deposit date:2017-06-20
Release date:2018-03-14
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.
Nat. Struct. Mol. Biol., 25, 2018
5K2H
DownloadVisualize
BU of 5k2h by Molmil
Structure of GNNQQNY from yeast prion Sup35 in space group P212121 determined by MicroED
Descriptor: Eukaryotic peptide chain release factor GTP-binding subunit
Authors:Rodriguez, J.A, Sawaya, M.R, Cascio, D, Eisenberg, D.S.
Deposit date:2016-05-18
Release date:2016-09-14
Last modified:2024-03-06
Method:ELECTRON CRYSTALLOGRAPHY (1.05 Å)
Cite:Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.
Proc.Natl.Acad.Sci.USA, 113, 2016
5K2E
DownloadVisualize
BU of 5k2e by Molmil
Structure of NNQQNY from yeast prion Sup35 with zinc acetate determined by MicroED
Descriptor: ACETIC ACID, Eukaryotic peptide chain release factor GTP-binding subunit, ZINC ION
Authors:Rodriguez, J.A, Sawaya, M.R, Cascio, D, Eisenberg, D.S.
Deposit date:2016-05-18
Release date:2016-09-14
Last modified:2024-03-06
Method:ELECTRON CRYSTALLOGRAPHY (1 Å)
Cite:Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.
Proc.Natl.Acad.Sci.USA, 113, 2016
5K2F
DownloadVisualize
BU of 5k2f by Molmil
Structure of NNQQNY from yeast prion Sup35 with cadmium acetate determined by MicroED
Descriptor: ACETATE ION, CADMIUM ION, Eukaryotic peptide chain release factor GTP-binding subunit
Authors:Rodriguez, J.A, Sawaya, M.R, Cascio, D, Eisenberg, D.S.
Deposit date:2016-05-18
Release date:2016-09-14
Last modified:2024-03-06
Method:ELECTRON CRYSTALLOGRAPHY (1 Å)
Cite:Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.
Proc.Natl.Acad.Sci.USA, 113, 2016
5K2G
DownloadVisualize
BU of 5k2g by Molmil
Structure of GNNQQNY from yeast prion Sup35 in space group P21 determined by MicroED
Descriptor: Eukaryotic peptide chain release factor GTP-binding subunit
Authors:Rodriguez, J.A, Sawaya, M.R, Cascio, D, Eisenberg, D.S.
Deposit date:2016-05-18
Release date:2016-09-14
Last modified:2024-03-06
Method:ELECTRON CRYSTALLOGRAPHY (1.1 Å)
Cite:Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.
Proc.Natl.Acad.Sci.USA, 113, 2016
6N3J
DownloadVisualize
BU of 6n3j by Molmil
MicroED Structure of the CTD-SP1 fragment of HIV-1 Gag
Descriptor: CTD-SP1 fragment of HIV-1 Gag
Authors:Purdy, M.D, Shi, D, Hattne, J, Chrustowicz, J.
Deposit date:2018-11-15
Release date:2018-12-12
Last modified:2023-10-11
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:MicroED structures of HIV-1 Gag CTD-SP1 reveal binding interactions with the maturation inhibitor bevirimat.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6N3U
DownloadVisualize
BU of 6n3u by Molmil
MicroED Structure of the CTD-SP1 fragment of HIV-1 Gag with bound maturation inhibitor Bevirimat.
Descriptor: CTD-SP1 fragment of HIV-1 Gag
Authors:Purdy, M.D, Shi, D, Hattne, J, Chrustowicz, J.
Deposit date:2018-11-16
Release date:2018-12-12
Last modified:2023-10-25
Method:ELECTRON CRYSTALLOGRAPHY (2.9 Å)
Cite:MicroED structures of HIV-1 Gag CTD-SP1 reveal binding interactions with the maturation inhibitor bevirimat.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6AXZ
DownloadVisualize
BU of 6axz by Molmil
Segment from bank vole prion protein 168-176 QYNNQNNFV
Descriptor: Major prion protein
Authors:Glynn, C, Rodriguez, J.A, Boyer, D.R, Gallagher-Jones, M.
Deposit date:2017-09-07
Release date:2018-01-17
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (0.75 Å)
Cite:Sub-angstrom cryo-EM structure of a prion protofibril reveals a polar clasp.
Nat. Struct. Mol. Biol., 25, 2018

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon