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7BVS
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BU of 7bvs by Molmil
DfgA-DfgB complex apo
Descriptor: DfgB, GLYCEROL, MANGANESE (II) ION, ...
Authors:Mori, T, He, H, Abe, I.
Deposit date:2020-04-11
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
6LTB
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BU of 6ltb by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-AMPPNP bound form
Descriptor: Nonribosomal peptide synthetase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTA
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BU of 6lta by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)
Descriptor: ACRYLIC ACID, Nonribosomal peptide synthetase
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTC
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BU of 6ltc by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nonribosomal peptide synthetase, ...
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTD
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BU of 6ltd by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
Descriptor: ADENOSINE MONOPHOSPHATE, Nonribosomal peptide synthetase, alpha-methyl-L-serine
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
5XXP
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BU of 5xxp by Molmil
Crystal structure of CbnR_DBD-DNA complex
Descriptor: DNA (25-MER), LysR-type regulatory protein
Authors:Senda, T, Senda, M.
Deposit date:2017-07-04
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region
FEBS J., 285, 2018
6LVY
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BU of 6lvy by Molmil
Crystal structure of TLR7/Cpd-2 (SM-360320) complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6-azanyl-2-(2-methoxyethoxy)-9-(phenylmethyl)-7H-purin-8-one, ...
Authors:Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2020-02-06
Release date:2020-11-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural analysis reveals TLR7 dynamics underlying antagonism.
Nat Commun, 11, 2020
6M35
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BU of 6m35 by Molmil
Crystal structure of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Descriptor: FE (III) ION, GLYCEROL, SULFATE ION, ...
Authors:Sato, Y, Yabuki, T, Arakawa, T, Yamada, C, Fushinobu, S, Wakagi, T.
Deposit date:2020-03-02
Release date:2020-07-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase fromSulfurisphaera tokodaii.
J Struct Biol X, 4, 2020
6LW0
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BU of 6lw0 by Molmil
Crystal structure of TLR7/Cpd-6 (DSR-139293) complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-ethoxy-8-(5-fluoranylpyridin-3-yl)-9-[[4-[[(1S,4S)-5-methyl-2,5-diazabicyclo[2.2.1]heptan-2-yl]methyl]phenyl]methyl]purin-6-amine, ...
Authors:Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2020-02-06
Release date:2020-11-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural analysis reveals TLR7 dynamics underlying antagonism.
Nat Commun, 11, 2020
6LW1
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BU of 6lw1 by Molmil
Cryo-EM structure of TLR7/Cpd-7 (DSR-139970) complex in open form
Descriptor: 2-ethoxy-8-(5-fluoranylpyridin-3-yl)-6-methyl-9-[[4-[[(1S,4S)-5-methyl-2,5-diazabicyclo[2.2.1]heptan-2-yl]methyl]phenyl]methyl]purine, Toll-like receptor 7
Authors:Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2020-02-06
Release date:2020-11-11
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural analysis reveals TLR7 dynamics underlying antagonism.
Nat Commun, 11, 2020
6LVZ
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BU of 6lvz by Molmil
Crystal structure of TLR7/Cpd-3 (SM-394830) complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6-azanyl-2-(2-methoxyethoxy)-9-(pyridin-3-ylmethyl)-7H-purin-8-one, ...
Authors:Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2020-02-06
Release date:2020-11-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Structural analysis reveals TLR7 dynamics underlying antagonism.
Nat Commun, 11, 2020
6LVX
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BU of 6lvx by Molmil
Crystal structure of TLR7/Cpd-1 (SM-374527) complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6-azanyl-2-butoxy-9-(phenylmethyl)-7H-purin-8-one, ...
Authors:Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2020-02-06
Release date:2020-11-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural analysis reveals TLR7 dynamics underlying antagonism.
Nat Commun, 11, 2020
7D98
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BU of 7d98 by Molmil
Crystal structure of full-length CbnR complexed with the target DNA complex
Descriptor: DNA (56-mer), LysR-type regulatory protein
Authors:Senda, M, Giannopoulou, E, Senda, T.
Deposit date:2020-10-12
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of the full-length LysR-type transcription regulator CbnR in complex with promoter DNA.
Febs J., 288, 2021
7VTB
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BU of 7vtb by Molmil
Partially closed conformation of talaropentaene synthase cyclase domain
Descriptor: NICKEL (II) ION, TvTS cyclase domain
Authors:Hui, T, Mori, T, Abe, I.
Deposit date:2021-10-28
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of non-squalene triterpenes.
Nature, 606, 2022
7VTA
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BU of 7vta by Molmil
Talaromyces verruculosus talaropentaene synthase apo
Descriptor: TvTS cyclase domain
Authors:Hui, T, Mori, T, Abe, I.
Deposit date:2021-10-28
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of non-squalene triterpenes.
Nature, 606, 2022
7VU9
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BU of 7vu9 by Molmil
Pholiota squarrosa lectin (PhoSL) in complex with fucose(alpha1-6)[GlcNAc(beta1-4)]GlcNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, FORMIC ACID, Lectin (PhoSL)
Authors:Yamasaki, K, Yamasaki, T, Kubota, T.
Deposit date:2021-11-01
Release date:2022-10-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.154 Å)
Cite:Core fucose-specific Pholiota squarrosa lectin (PhoSL) as a potent broad-spectrum inhibitor of SARS-CoV-2 infection.
Febs J., 290, 2023
7WJ9
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BU of 7wj9 by Molmil
Crystal structure of Lactococcus lactis subsp. cremoris GH31 alpha-1,3-glucosidase, P21 space group
Descriptor: 1,2-ETHANEDIOL, Alpha-xylosidase, Xylitol
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2022-01-06
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
7WJF
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BU of 7wjf by Molmil
Crystal structure of Lactococcus lactis subsp. cremoris GH31 alpha-1,3-glucosidase mutant D394A in complex with kojibiose
Descriptor: 1,2-ETHANEDIOL, Alpha-xylosidase, alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2022-01-06
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
7WJC
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BU of 7wjc by Molmil
Crystal structure of Lactococcus lactis subsp. cremoris GH31 alpha-1,3-glucosidase mutant D394A in complex with nigerose
Descriptor: 1,2-ETHANEDIOL, Alpha-xylosidase, alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2022-01-06
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
7WJA
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BU of 7wja by Molmil
Crystal structure of Lactococcus lactis subsp. cremoris GH31 alpha-1,3-glucosidase, P6322 space group
Descriptor: 1,2-ETHANEDIOL, Alpha-xylosidase
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2022-01-06
Release date:2022-03-30
Last modified:2022-05-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
7WJB
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BU of 7wjb by Molmil
Crystal structure of Lactococcus lactis subsp. cremoris GH31 alpha-1,3-glucosidase in complex with glucose
Descriptor: 1,2-ETHANEDIOL, Alpha-xylosidase, alpha-D-glucopyranose, ...
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2022-01-06
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
7WJD
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BU of 7wjd by Molmil
Crystal structure of Lactococcus lactis subsp. cremoris GH31 alpha-1,3-glucosidase mutant D394A in complex with nigerotriose
Descriptor: 1,2-ETHANEDIOL, Alpha-xylosidase, alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose, ...
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2022-01-06
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
7WJE
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BU of 7wje by Molmil
Crystal structure of Lactococcus lactis subsp. cremoris GH31 alpha-1,3-glucosidase mutant D394A in complex with nigerotetraose
Descriptor: 1,2-ETHANEDIOL, Alpha-xylosidase, alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2022-01-06
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
7XI9
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BU of 7xi9 by Molmil
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-ordered form)
Descriptor: DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Onoda, H, Kikuchi, A, Kori, S, Yoshimi, S, Yamagata, A, Arita, K.
Deposit date:2022-04-12
Release date:2022-11-30
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Structural basis for activation of DNMT1.
Nat Commun, 13, 2022
7XIB
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BU of 7xib by Molmil
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-disordered form)
Descriptor: DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Onoda, H, Kikuchi, A, Kori, S, Yoshimi, S, Yamagata, A, Arita, K.
Deposit date:2022-04-12
Release date:2022-11-30
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (2.23 Å)
Cite:Structural basis for activation of DNMT1.
Nat Commun, 13, 2022

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