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8FMF
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BU of 8fmf by Molmil
Structure of CBASS Cap5 from Pseudomonas syringae as an activated tetramer with the cyclic dinucleotide 3'2'-c-diAMP ligand (1 tetramer in the AU)
Descriptor: Cyclic (adenosine-(2'-5')-monophosphate-adenosine-(3'-5')-monophosphate, GLYCEROL, HEXAETHYLENE GLYCOL, ...
Authors:Rechkoblit, O, Kreitler, D.F, Aggarwal, A.K.
Deposit date:2022-12-23
Release date:2024-02-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Activation of CBASS Cap5 endonuclease immune effector by cyclic nucleotides.
Nat.Struct.Mol.Biol., 31, 2024
8FMG
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BU of 8fmg by Molmil
Structure of CBASS Cap5 from Pseudomonas syringae as an activated tetramer with the cyclic dinucleotide 3'2'-c-diAMP ligand (3 tetramers in the AU)
Descriptor: Cyclic (adenosine-(2'-5')-monophosphate-adenosine-(3'-5')-monophosphate, MAGNESIUM ION, SAVED domain-containing protein, ...
Authors:Rechkoblit, O, Kreitler, D.F, Aggarwal, A.K.
Deposit date:2022-12-23
Release date:2024-02-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Activation of CBASS Cap5 endonuclease immune effector by cyclic nucleotides.
Nat.Struct.Mol.Biol., 31, 2024
8FM1
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BU of 8fm1 by Molmil
Structure of CBASS Cap5 from Pseudomonas syringae in the absence of a ligand (apo form dimer)
Descriptor: SAVED domain-containing protein, ZINC ION
Authors:Rechkoblit, O, Kreitler, D.F, Aggarwal, A.K.
Deposit date:2022-12-22
Release date:2024-02-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Activation of CBASS Cap5 endonuclease immune effector by cyclic nucleotides.
Nat.Struct.Mol.Biol., 31, 2024
8FRK
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BU of 8frk by Molmil
Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SGC8158
Descriptor: 5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine, ETHANOL, POTASSIUM ION, ...
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2023-01-07
Release date:2023-07-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structures of SARS-CoV-2 N7-methyltransferase with DOT1L and PRMT7 inhibitors provide a platform for new antivirals.
Plos Pathog., 19, 2023
8FRJ
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BU of 8frj by Molmil
Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SGC0946
Descriptor: 5-bromo-7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine, Transcription factor ETV6,Guanine-N7 methyltransferase nsp14 chimera, ZINC ION
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2023-01-07
Release date:2023-07-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structures of SARS-CoV-2 N7-methyltransferase with DOT1L and PRMT7 inhibitors provide a platform for new antivirals.
Plos Pathog., 19, 2023
6P1H
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BU of 6p1h by Molmil
Cryo-EM Structure of DNA Polymerase Delta Holoenzyme
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (30-MER), ...
Authors:Jain, R, Rice, W, Aggarwal, A.K.
Deposit date:2019-05-19
Release date:2019-10-02
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure and dynamics of eukaryotic DNA polymerase delta holoenzyme.
Nat.Struct.Mol.Biol., 26, 2019
6Q02
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BU of 6q02 by Molmil
Polymerase Eta-catalyzed insertion of the mismatched A opposite template cytarabine (AraC) residue
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA Primer Strand, DNA polymerase eta, ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2019-08-01
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase eta.
Sci Rep, 9, 2019
6PZ3
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BU of 6pz3 by Molmil
Polymerase Eta-catalyzed insertion of correct G opposite template cytarabine (AraC) residue
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA Primer strand, DNA polymerase eta, ...
Authors:Rechkoblit, O, Aggarwal, A.K.
Deposit date:2019-07-31
Release date:2019-11-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase eta.
Sci Rep, 9, 2019
1OXJ
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BU of 1oxj by Molmil
Crystal structure of the Smaug RNA binding domain
Descriptor: RNA-binding protein Smaug
Authors:Green, J.B, Gardner, C.D, Wharton, R.P, Aggarwal, A.K.
Deposit date:2003-04-02
Release date:2003-07-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:RNA recognition via the SAM domain of Smaug.
Mol.Cell, 11, 2003
1N72
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BU of 1n72 by Molmil
Structure and Ligand of a Histone Acetyltransferase Bromodomain
Descriptor: HISTONE ACETYLTRANSFERASE
Authors:Dhalluin, C, Carlson, J.E, Zeng, L, He, C, Aggarwal, A.K, Zhou, M.-M.
Deposit date:2002-11-12
Release date:2002-12-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and Ligand of a Histone Acetyltransferase Bromodomain
Nature, 399, 1999
1Q7F
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BU of 1q7f by Molmil
Brain Tumor NHL domain
Descriptor: brain tumor CG10719-PA
Authors:Edwards, T.A, Wilkinson, B.D, Wharton, R.P, Aggarwal, A.K.
Deposit date:2003-08-18
Release date:2003-10-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Model of the Brain Tumor-Pumilio translation repressor complex
Genes Dev., 17, 2003
5HR4
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BU of 5hr4 by Molmil
Structure of Type IIL restriction-modification enzyme MmeI in complex with DNA has implications for engineering of new specificities
Descriptor: CALCIUM ION, DNA (5'-D(P*GP*TP*TP*AP*TP*GP*TP*CP*GP*GP*AP*TP*A)-3'), DNA (5'-D(P*TP*AP*TP*CP*CP*GP*AP*CP*AP*TP*AP*AP*C)-3'), ...
Authors:Callahan, S.J, Luyten, Y.A, Gupta, Y.K, Wilson, G.G, Roberts, R.J, Morgan, R.D, Aggarwal, A.K.
Deposit date:2016-01-22
Release date:2016-04-27
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5964 Å)
Cite:Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.
Plos Biol., 14, 2016
5IUD
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BU of 5iud by Molmil
Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer
Descriptor: DNA polymerase alpha catalytic subunit, DNA primer, DNA template
Authors:Coloma, J, Aggarwal, A.K.
Deposit date:2016-03-17
Release date:2016-04-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer.
Sci Rep, 6, 2016
5J18
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BU of 5j18 by Molmil
Solution structure of Ras Binding Domain (RBD) of B-Raf complexed with Rigosertib (Complex I)
Descriptor: N-[2-methoxy-5-({[(E)-2-(2,4,6-trimethoxyphenyl)ethenyl]sulfonyl}methyl)phenyl]glycine, Serine/threonine-protein kinase B-raf
Authors:Dutta, K, Vasquez-Del Carpio, R, Aggarwal, A.K, Reddy, E.P.
Deposit date:2016-03-29
Release date:2016-05-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling.
Cell, 165, 2016
8U72
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BU of 8u72 by Molmil
Cryo-EM structure of the SPARTA oligomer with guide RNA and target DNA
Descriptor: DNA (5'-D(P*TP*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*C)-3'), MAGNESIUM ION, Piwi domain-containing protein, ...
Authors:Malik, R, Kottur, J, Aggarwal, A.K.
Deposit date:2023-09-14
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Nucleic acid mediated activation of prokaryotic Argonaute immune system
Nat Commun, 2024
8U7B
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BU of 8u7b by Molmil
Crystal structure of Apo form of Short Prokaryotic Argonaute TIR-APAZ (SPARTA) heterodimer
Descriptor: MANGANESE (II) ION, PROLINE, Piwi domain-containing protein, ...
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2023-09-15
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Nucleic acid mediated activation of a short prokaryotic Argonaute immune system
Nat Commun, 2024
1JGG
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BU of 1jgg by Molmil
Even-skipped Homeodomain Complexed to AT-rich DNA
Descriptor: 5'-D(P*AP*AP*TP*TP*CP*AP*AP*TP*TP*A)-3', 5'-D(P*TP*AP*AP*TP*TP*GP*AP*AP*TP*T)-3', Segmentation Protein Even-Skipped
Authors:Hirsch, J.A, Aggarwal, A.K.
Deposit date:2001-06-25
Release date:2001-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the even-skipped homeodomain complexed to AT-rich DNA: new perspectives on homeodomain specificity.
EMBO J., 14, 1995
1JIH
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BU of 1jih by Molmil
Yeast DNA Polymerase ETA
Descriptor: DNA Polymerase ETA
Authors:Trincao, J, Johnson, R.E, Escalante, C.R, Prakash, S, Prakash, L, Aggarwal, A.K.
Deposit date:2001-07-02
Release date:2002-01-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis
Mol.Cell, 8, 2001
1ESG
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BU of 1esg by Molmil
RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA.
Descriptor: DNA (5'-D(*TP*GP*AP*AP*TP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*AP*TP*TP*CP*A)-3'), TYPE II RESTRICTION ENZYME BAMHI
Authors:Viadiu, H, Aggarwal, A.K.
Deposit date:2000-04-09
Release date:2000-05-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of BamHI bound to nonspecific DNA: a model for DNA sliding.
Mol.Cell, 5, 2000
2BAM
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BU of 2bam by Molmil
RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND CALCIUM IONS (PRE-REACTIVE COMPLEX).
Descriptor: CALCIUM ION, DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'), PROTEIN (ENDONUCLEASE BAMHI)
Authors:Viadiu, H, Aggarwal, A.K.
Deposit date:1998-08-19
Release date:1999-10-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The role of metals in catalysis by the restriction endonuclease BamHI.
Nat.Struct.Biol., 5, 1998
5J17
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BU of 5j17 by Molmil
Solution structure of Ras Binding Domain (RBD) of B-Raf
Descriptor: Serine/threonine-protein kinase B-raf
Authors:Dutta, K, Vasquez-Del Carpio, R, Aggarwal, A.K, Reddy, E.P.
Deposit date:2016-03-29
Release date:2016-10-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling.
Cell, 165, 2016
5JRZ
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BU of 5jrz by Molmil
Structure of the NS3 helicase from the French Polynesia strain of the Zika virus
Descriptor: ACETATE ION, Helicase, PYROPHOSPHATE 2-
Authors:Jain, R, Coloma, J, Aggarwal, A.K.
Deposit date:2016-05-06
Release date:2016-07-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Structure of the NS3 helicase from Zika virus.
Nat.Struct.Mol.Biol., 23, 2016
5KQR
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BU of 5kqr by Molmil
Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethionine
Descriptor: CHLORIDE ION, Methyltransferase, PHOSPHATE ION, ...
Authors:Jain, R, Coloma, J, Rajashankar, K.R, Aggarwal, A.K.
Deposit date:2016-07-06
Release date:2016-09-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.331 Å)
Cite:Structures of NS5 Methyltransferase from Zika Virus.
Cell Rep, 16, 2016
5KQS
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BU of 5kqs by Molmil
Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethionine and 7-methyl-guanosine-5'-diphosphate
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, ACETATE ION, GLYCEROL, ...
Authors:Coloma, J, Jain, R, Rajashankar, K.R, Aggarwal, A.K.
Deposit date:2016-07-06
Release date:2016-09-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of NS5 Methyltransferase from Zika Virus.
Cell Rep, 16, 2016
5L2X
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BU of 5l2x by Molmil
Crystal structure of human PrimPol ternary complex
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*GP*GP*TP*AP*GP*CP*(DDG))-3'), ...
Authors:Rechkoblit, O, Gupta, Y.K, Malik, R, Rajashankar, K.R, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2016-08-02
Release date:2016-11-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and mechanism of human PrimPol, a DNA polymerase with primase activity.
Sci Adv, 2, 2016

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