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8V7L

Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, EHistone H3.2polymer13515271.92UniProt (P84233)
Pfam (PF00125)
In PDB
Xenopus laevis (African clawed frog)
2B, FHistone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
In PDB
Xenopus laevis (African clawed frog)
3C, GHistone H2A type 1polymer12913978.22UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
In PDB
Xenopus laevis (African clawed frog)
4D, HHistone H2Bpolymer12213524.82UniProt (P02281)
Pfam (PF00125)
In PDB
Xenopus laevis (African clawed frog)H2B1.1
5IWidom 601 DNA (147-mer) plus 60 base pairs flanking DNA (reverse strand)polymer20764200.91synthetic construct
6JWidom 601 DNA (147-mer) with 60 base pairs flanking DNA (forward strand)polymer20763626.51synthetic construct
7WSWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5polymer1052122089.31UniProt (O60264)
Pfam (PF00176)
Pfam (PF00271)
Pfam (PF09110)
Pfam (PF09111)
In PDB
Homo sapiens (human)
8WADENOSINE-5'-DIPHOSPHATEnon-polymer427.21Chemie (ADP)
9WMAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103engineered mutation
Ala 110Cys 111engineered mutation
C, G: 1 - 129 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100engineered mutation
Ser 123Ala 124engineered mutation
D, H: 1 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains11
Total formula weight357992.9
Non-Polymers*Number of molecules2
Total formula weight451.5
All*Total formula weight358444.4
*Water molecules are not included.

219869

PDB entries from 2024-05-15

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