8R3V

Escherichia coli paused disome complex (non-rotated disome interface)

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	12	50S ribosomal protein L28	polymer	78	9027.6	1	UniProt (P0A7M2) Pfam (PF00830) In PDB	Escherichia coli	ribosomal protein bL28
2	32	50S ribosomal protein L30	polymer	59	6554.8	1	UniProt (P0AG51) Pfam (PF00327) In PDB	Escherichia coli	ribosomal protein uL30
3	4	Large ribosomal subunit protein bL31A	polymer	70	7887.1	1	UniProt (P0A7M9) Pfam (PF01197) In PDB	Escherichia coli	50S ribosomal protein L31
4	62	50S ribosomal protein L35	polymer	65	7313.0	1	UniProt (P0A7Q1) Pfam (PF01632) In PDB	Escherichia coli	Ribosomal protein A, ribosomal protein bL35
5	71, 72	23S ribosomal RNA	polymer	2904	941812.6	2		Escherichia coli
6	82	5S ribosomal RNA	polymer	120	38790.1	1	GenBank (CP035706.1)	Escherichia coli
7	A1, A2	16S ribosomal RNA	polymer	1542	499873.4	2		Escherichia coli
8	B, B2	Small ribosomal subunit protein uS2	polymer	241	26781.7	2	UniProt (P0A7V0) Pfam (PF00318) In PDB	Escherichia coli	30S ribosomal protein S2
9	C1, C2	Small ribosomal subunit protein uS3	polymer	233	26031.3	2	UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB	Escherichia coli	30S ribosomal protein S3
10	D1, D2	Small ribosomal subunit protein uS4	polymer	206	23514.2	2	UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB	Escherichia coli	30S ribosomal protein S4
11	E1, E2	Small ribosomal subunit protein uS5	polymer	167	17629.4	2	UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB	Escherichia coli	30S ribosomal protein S5
12	F1, F2	30S ribosomal protein S6	polymer	135	15727.5	2	UniProt (P02358) Pfam (PF01250) In PDB	Escherichia coli	Small ribosomal subunit protein bS6
13	G1, G2	30S ribosomal protein S7	polymer	179	20055.2	2	UniProt (P02359) Pfam (PF00177) In PDB	Escherichia coli	Small ribosomal subunit protein uS7
14	H1, H2	Small ribosomal subunit protein uS8	polymer	130	14146.6	2	UniProt (P0A7W7) Pfam (PF00410) In PDB	Escherichia coli	30S ribosomal protein S8
15	I1, I2	Small ribosomal subunit protein uS9	polymer	130	14886.3	2	UniProt (P0A7X3) Pfam (PF00380) In PDB	Escherichia coli	30S ribosomal protein S9
16	J1, J2	30S ribosomal protein S10	polymer	103	11755.6	2	UniProt (P0A7R5) Pfam (PF00338) In PDB	Escherichia coli	Small ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE
17	K1, K2	Small ribosomal subunit protein uS11	polymer	129	13871.0	2	UniProt (P0A7R9) Pfam (PF00411) In PDB	Escherichia coli	30S ribosomal protein S11
18	L1, L2	Small ribosomal subunit protein uS12	polymer	124	13768.2	2	UniProt (P0A7S3) Pfam (PF00164) In PDB	Escherichia coli	30S ribosomal protein S12
19	M1, M2	Small ribosomal subunit protein uS13	polymer	118	13128.5	2	UniProt (P0A7S9) Pfam (PF00416) In PDB	Escherichia coli	30S ribosomal protein S13
20	N1, N2	Small ribosomal subunit protein uS14	polymer	101	11606.6	2	UniProt (P0AG59) Pfam (PF00253) In PDB	Escherichia coli	30S ribosomal protein S14
21	O1, O2	30S ribosomal protein S15	polymer	89	10290.8	2	UniProt (P0ADZ4) Pfam (PF00312) In PDB	Escherichia coli	Small ribosomal subunit protein uS15
22	P1	30S ribosomal protein S16	polymer	82	9207.6	1	UniProt (P0A7T3) Pfam (PF00886) In PDB	Escherichia coli	Small ribosomal subunit protein bS16
23	Q1, Q2	Small ribosomal subunit protein uS17	polymer	84	9724.5	2	UniProt (P0AG63) Pfam (PF00366) In PDB	Escherichia coli	30S ribosomal protein S17
24	R1, R2	Small ribosomal subunit protein bS18	polymer	75	9005.5	2	UniProt (P0A7T7) Pfam (PF01084) In PDB	Escherichia coli	30S ribosomal protein S18
25	S1, S2	Small ribosomal subunit protein uS19	polymer	92	10455.4	2	UniProt (P0A7U3) Pfam (PF00203) In PDB	Escherichia coli	30S ribosomal protein S19
26	T1	Small ribosomal subunit protein bS20	polymer	87	9708.5	1	UniProt (P0A7U7) Pfam (PF01649) In PDB	Escherichia coli	30S ribosomal protein S20
27	U1, U2	30S ribosomal protein S21	polymer	71	8524.0	2	UniProt (P68679) Pfam (PF01165) In PDB	Escherichia coli	Small ribosomal subunit protein bS21
28	V2	messenger RNA	polymer	64	20786.5	1		Escherichia coli
29	W	tRNA-Trp (P-site)	polymer	76	24628.9	1		Escherichia coli
30	W1	tRNA-Phe (P-site)	polymer	76	24651.9	1		Escherichia coli
31	X2	tRNA-Arg (E-site)	polymer	77	24978.1	1		Escherichia coli
32	Y1	tRNA-Val (A-site)	polymer	76	24617.8	1	GenBank (1847302804)	Escherichia coli
33	Y2	tRNA-Ala (A-site)	polymer	76	24555.7	1	GenBank (1845258627)	Escherichia coli
34	Z1	30S ribosomal protein S1	polymer	557	61238.9	1	UniProt (P0AG67) Pfam (PF00575) In PDB	Escherichia coli	Bacteriophage Q beta RNA-directed RNA polymerase subunit I,Small ribosomal subunit protein bS1
35	a2	Large ribosomal subunit protein uL1	polymer	234	24765.7	1	UniProt (P0A7L0) Pfam (PF00687) In PDB	Escherichia coli	50S ribosomal protein L1
36	b2	50S ribosomal protein L2	polymer	273	29923.6	1	UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB	Escherichia coli	ribosomal protein uL2
37	e2	50S ribosomal protein L5	polymer	179	20333.6	1	UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB	Escherichia coli	ribosomal protein uL5
38	g2	50S ribosomal protein L33	polymer	55	6388.6	1	UniProt (P0A7N9) Pfam (PF00471) In PDB	Escherichia coli	ribosomal protein bL33
39	h2	50S ribosomal protein L16	polymer	136	15312.3	1	UniProt (P0ADY7) Pfam (PF00252) In PDB	Escherichia coli	ribosomal protein uL16
40	i2	50S ribosomal protein L9	polymer	149	15789.0	1	UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB	Escherichia coli	ribosomal protein bL9
41	l2	50S ribosomal protein L34	polymer	46	5397.5	1	UniProt (P0A7P5) Pfam (PF00468) In PDB	Escherichia coli	ribosomal protein bL34
42	o2	50S ribosomal protein L15	polymer	144	15008.5	1	UniProt (P02413) Pfam (PF00828) In PDB	Escherichia coli	ribosomal protein uL15
43	p	Nascent chain	polymer	10	1087.2	1		Escherichia coli
44	r2	50S ribosomal protein L18	polymer	117	12794.7	1	UniProt (P0C018) Pfam (PF00861) In PDB	Escherichia coli	ribosomal protein uL18
45	z2	50S ribosomal protein L27	polymer	85	9146.5	1	UniProt (P0A7L8) Pfam (PF01016) In PDB	Escherichia coli	Large ribosomal subunit protein bL27
46	4, B	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
47	72	1,4-DIAMINOBUTANE	non-polymer		88.2	2	Chemie (PUT)
48	72	SPERMIDINE	non-polymer		145.2	1	Chemie (SPD)
49	72, A1, A2, Y2, h2...	MAGNESIUM ION	non-polymer		24.3	297	Chemie (MG)
50	Y2	ALANINE	non-polymer		89.1	1	Chemie (ALA)

Sequence modifications

Y1: 1 - 76 (GenBank: 1847302804)

PDB	External Database	Details
Cm0 34	U 1288720	variant

Contents of the asymmetric unit

Polymers	Number of chains	65
	Total formula weight	3875069.5
Non-Polymers*	Number of molecules	303
	Total formula weight	7760.0
All*	Total formula weight	3882829.5

*Water molecules are not included.