8G34
Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 0 | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (A0A828UBL8) Pfam (PF01783) UniProt (by SIFTS) (P0A7N4) In PDB | Escherichia coli | |
2 | 1 | 50S ribosomal protein L33 | polymer | 51 | 5928.0 | 1 | UniProt (A0A891SPC3) Pfam (PF00471) UniProt (by SIFTS) (P0A7N9) In PDB | Escherichia coli | |
3 | 2 | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) Pfam (PF00468) UniProt (by SIFTS) (P0A7P5) In PDB | Escherichia coli | |
4 | 3 | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (E9XJC8) Pfam (PF01632) UniProt (by SIFTS) (P0A7Q1) In PDB | Escherichia coli | |
5 | 4 | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6) In PDB | Escherichia coli | |
6 | A | 5S | polymer | 117 | 37848.6 | 1 | GenBank (1845258627) | Escherichia coli | |
7 | B | 23S | polymer | 2903 | 941306.2 | 1 | GenBank (937521852) | Escherichia coli | |
8 | C | 50S ribosomal protein L2 | polymer | 272 | 29792.4 | 1 | UniProt (A0A1X3JB59) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60422) In PDB | Escherichia coli | |
9 | D | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | Escherichia coli | Large ribosomal subunit protein uL3 |
10 | E | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (A0A7U9FY55) Pfam (PF00573) UniProt (by SIFTS) (P60723) In PDB | Escherichia coli | |
11 | F | 50S ribosomal protein L5 | polymer | 178 | 20202.4 | 1 | UniProt (D6IEK6) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P62399) In PDB | Escherichia coli | |
12 | G | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 1 | UniProt (A0A8E0IYC4) Pfam (PF00347) UniProt (by SIFTS) (P0AG55) In PDB | Escherichia coli | |
13 | J | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (S1EW51) Pfam (PF00572) UniProt (by SIFTS) (P0AA10) In PDB | Escherichia coli | |
14 | K | 50S ribosomal protein L14 | polymer | 122 | 13433.9 | 1 | UniProt (C3SQZ2) Pfam (PF00238) UniProt (by SIFTS) (P0ADY3) In PDB | Escherichia coli | |
15 | L | 50S ribosomal protein L15 | polymer | 143 | 14877.3 | 1 | UniProt (A0A037Y8L6) Pfam (PF00828) UniProt (by SIFTS) (P02413) In PDB | Escherichia coli | |
16 | M | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli | Large ribosomal subunit protein uL16 |
17 | N | 50S ribosomal protein L17 | polymer | 121 | 13851.1 | 1 | UniProt (A0A2T1LEK9) Pfam (PF01196) UniProt (by SIFTS) (P0AG44) In PDB | Escherichia coli | |
18 | O | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (A0A1X3KXD9) Pfam (PF00861) UniProt (by SIFTS) (P0C018) In PDB | Escherichia coli | |
19 | P | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (S1PSA3) Pfam (PF01245) UniProt (by SIFTS) (P0A7K6) In PDB | Escherichia coli | |
20 | Q | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (L4J8J1) Pfam (PF00453) UniProt (by SIFTS) (P0A7L3) In PDB | Escherichia coli | |
21 | R | Ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (A0A829CSJ4) Pfam (PF00829) UniProt (by SIFTS) (P0AG48) In PDB | Escherichia coli | |
22 | S | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) In PDB | Escherichia coli | Large ribosomal subunit protein uL22 |
23 | T | 50S ribosomal protein L23 | polymer | 94 | 10661.6 | 1 | UniProt (S1EUY1) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0) In PDB | Escherichia coli | |
24 | U | 50S ribosomal protein L24 | polymer | 103 | 11208.1 | 1 | UniProt (S1E9P3) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (P60624) In PDB | Escherichia coli | |
25 | V | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (D7XH79) Pfam (PF01386) UniProt (by SIFTS) (P68919) In PDB | Escherichia coli | |
26 | W | 50S ribosomal protein L27 | polymer | 79 | 8476.7 | 1 | UniProt (C3SSG7) Pfam (PF01016) UniProt (by SIFTS) (P0A7L8) In PDB | Escherichia coli | |
27 | X | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (A0A0E2KZD0) Pfam (PF00830) UniProt (by SIFTS) (P0A7M2) In PDB | Escherichia coli | |
28 | Y | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (D6IEL0) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) In PDB | Escherichia coli | |
29 | Z | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (A0A7U9B9V2) Pfam (PF00327) UniProt (by SIFTS) (P0AG51) In PDB | Escherichia coli | |
30 | 6 | GTPase HflX | polymer | 426 | 48393.0 | 1 | UniProt (A0A8F7XC98) Pfam (PF13167) Pfam (PF16360) Pfam (PF01926) Pfam (PF19275) UniProt (by SIFTS) (P25519) In PDB | Escherichia coli | GTP-binding protein HflX |
31 | x | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 1 | UniProt (A0A7U8ZXM0) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P0A7V3) In PDB | Escherichia coli | |
32 | f | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) Pfam (PF00177) In PDB | Escherichia coli | Small ribosomal subunit protein uS7 |
33 | h | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (V0A2W7) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3) In PDB | Escherichia coli | |
34 | i | 30S ribosomal protein S10 | polymer | 98 | 11197.0 | 1 | UniProt (A0A0H3EQD3) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5) In PDB | Escherichia coli | |
35 | l | 30S ribosomal protein S13 | polymer | 114 | 12625.8 | 1 | UniProt (S1P5F8) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9) In PDB | Escherichia coli | |
36 | m | 30S ribosomal protein S14 | polymer | 100 | 11489.4 | 1 | UniProt (A0A090BZT4) Pfam (PF00253) UniProt (by SIFTS) (P0AG59) In PDB | Escherichia coli | |
37 | r | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 1 | UniProt (A0A7U9LGZ0) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) In PDB | Escherichia coli | |
38 | u | Transcription termination/antitermination protein NusG | polymer | 59 | 6639.5 | 1 | UniProt (A0A2X1MT45) Pfam (PF00467) UniProt (by SIFTS) (P0AFG0) In PDB | Escherichia coli | |
39 | w | 30S ribosomal protein S2 | polymer | 218 | 24253.9 | 1 | UniProt (U9ZNW8) Pfam (PF00318) UniProt (by SIFTS) (P0A7V0) In PDB | Escherichia coli | |
40 | c | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (L3PZ69) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P0A7V8) In PDB | Escherichia coli | |
41 | d | 30S ribosomal protein S5 | polymer | 150 | 15804.3 | 1 | UniProt (F4TL26) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (P0A7W1) In PDB | Escherichia coli | |
42 | e | 30S ribosomal protein S6, non-modified isoform | polymer | 100 | 11669.4 | 1 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli | |
43 | g | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (A0A828U358) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7) In PDB | Escherichia coli | |
44 | j | 30S ribosomal protein S11 | polymer | 117 | 12487.2 | 1 | UniProt (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli | Small ribosomal subunit protein uS11 |
45 | k | 30S ribosomal protein S12 | polymer | 123 | 13637.0 | 1 | UniProt (I2UHF1) Pfam (PF00164) UniProt (by SIFTS) (P0A7S3) In PDB | Escherichia coli | |
46 | n | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (D7XN21) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4) In PDB | Escherichia coli | |
47 | o | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) Pfam (PF00886) UniProt (by SIFTS) (P0A7T3) In PDB | Escherichia coli | |
48 | p | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (A0A080IK26) Pfam (PF00366) UniProt (by SIFTS) (P0AG63) In PDB | Escherichia coli | |
49 | q | 30S ribosomal protein S18 | polymer | 55 | 6466.5 | 1 | UniProt (W1EY92) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) In PDB | Escherichia coli | |
50 | s | 30S ribosomal protein S20 | polymer | 85 | 9506.2 | 1 | UniProt (C3TRH7) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7) In PDB | Escherichia coli | |
51 | t | 30S ribosomal protein S21 (Fragment) | polymer | 51 | 6067.1 | 1 | UniProt (A0A5C9AJ78) Pfam (PF01165) UniProt (by SIFTS) (P68679) In PDB | Escherichia coli | |
52 | v | 16S | polymer | 1539 | 498701.3 | 1 | GenBank (1758835854) | Escherichia coli |
Sequence modifications
v: 2 - 1540 (GenBank: 1758835854)
PDB | External Database | Details |
---|---|---|
C 1408 | A 5555917 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 52 |
Total formula weight | 2140206.4 | |
All* | Total formula weight | 2140206.4 |