Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8EMM

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1a23S rRNApolymer2904941811.61Escherichia coli
2b5S rRNApolymer12038790.11GenBank (1273279017)Escherichia coli
3c50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
4d50S ribosomal protein L3polymer20922291.61UniProt (U9Y9G2)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli
5e50S ribosomal protein L4polymer20122121.61UniProt (A0A7U9FY55)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
6f50S ribosomal protein L5polymer17920333.61UniProt (A0A829CFT8)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
7g50S ribosomal protein L6polymer17718932.81UniProt (A0A862ZNS7)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
8h50S ribosomal protein L9polymer14915789.01UniProt (V0YZK9)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
9i50S ribosomal protein L13polymer14216050.61UniProt (S1EW51)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
10j50S ribosomal protein L14polymer12313565.11UniProt (S1NW45)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
11k50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
12l50S ribosomal protein L16polymer13615329.31UniProt (A0A7U9B8R8)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli
13m50S ribosomal protein L17polymer12714393.71UniProt (A0A1X3LC97)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
14n50S ribosomal protein L18polymer11712794.71UniProt (E3PKY8)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
15o50S ribosomal protein L19polymer11513159.31UniProt (V0AJX1)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
16p50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
17qRibosomal protein L21polymer10311586.41UniProt (A0A829CSJ4)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
18r50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
19s50S ribosomal protein L23polymer10011222.21UniProt (A0A829CFV1)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
20t50S ribosomal protein L24polymer10411339.31UniProt (A0A1X3KWX7)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
21u50S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
22v50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
23w50S ribosomal protein L28polymer789027.61UniProt (A0A1X3JA73)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
24x50S ribosomal protein L29polymer637286.51UniProt (D6IEL0)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
25y50S ribosomal protein L30polymer596554.81UniProt (V0YKA9)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
26z50S ribosomal protein L32polymer576463.41UniProt (D7XI28)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
27050S ribosomal protein L33polymer556388.61UniProt (F4NQ61)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
28150S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
29250S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
30350S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
31450S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coliLarge ribosomal subunit protein bL31-A
32Y, ZMet-NH-tRNApolymer7624496.62GenBank (1848851804)Escherichia coli
33A16S rRNApolymer1542499873.41GenBank (1758835854)Escherichia coli
34B30S ribosomal protein S2polymer24126781.71UniProt (C3TPN2)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
35C30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
36D30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF01479)
Pfam (PF00163)
In PDB		Escherichia coli
37E30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
38F30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
39G30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
40H30S ribosomal protein S8polymer13014146.61UniProt (D7XKZ3)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
41I30S ribosomal protein S9polymer13014886.31UniProt (A0A1X3LT86)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
42J30S ribosomal protein S10polymer10311755.61UniProt (V0ANK5)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
43K30S ribosomal protein S11polymer12913872.01UniProt (A0A0H3PWX2)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
44L30S ribosomal protein S12polymer12413814.21UniProt (A0A0F1AUC4)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
45M30S ribosomal protein S13polymer11813128.51UniProt (A0A7U9IV78)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
46N30S ribosomal protein S14polymer10111606.61UniProt (U9Y6H3)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
47O30S ribosomal protein S15polymer8910290.81UniProt (D8EB41)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
48P30S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
49Q30S ribosomal protein S17polymer849724.51UniProt (A0A829A8C6)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
50R30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
51S30S ribosomal protein S19polymer9210455.41UniProt (S1EA57)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
52T30S ribosomal protein S20polymer879708.51UniProt (C3TRH7)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
53U30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
54XmRNApolymer289099.51Escherichia coli
55a, A, Z, b, c...MAGNESIUM IONnon-polymer24.3321Chemie (MG)
56a, ASPERMIDINEnon-polymer145.217Chemie (SPD)
57aSPERMINEnon-polymer202.31Chemie (SPM)
58a, cPOTASSIUM IONnon-polymer39.110Chemie (K)
593, 4ZINC IONnon-polymer65.42Chemie (ZN)
60Z, YMETHIONINEnon-polymer149.22Chemie (MET)
61APAROMOMYCINnon-polymer615.61Chemie (PAR)
62waterwater18.03491Chemie (HOH)
Sequence modifications
l: 1 - 136 (UniProt: A0A7U9B8R8)
PDBExternal DatabaseDetails
Ms6 82Met 82conflict
K: 1 - 129 (UniProt: A0A0H3PWX2)
PDBExternal DatabaseDetails
Ias 119Asn 119conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains55
Total formula weight2198611.3
Non-Polymers*Number of molecules354
Total formula weight11909.3
All*Total formula weight2210520.5
*Water molecules are not included.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon