8CGU
Gentamicin bound to the 30S body
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 16S rRNA | polymer | 1540 | 499197.9 | 1 | Escherichia coli BW25113 | ||
2 | D | Small ribosomal subunit protein uS4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S4 |
3 | E | Small ribosomal subunit protein uS5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S5 |
4 | F | Small ribosomal subunit protein bS6, non-modified isoform | polymer | 131 | 15211.1 | 1 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli BW25113 | |
5 | H | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 1 | UniProt (P0A7W7) Pfam (PF00410) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S8 |
6 | K | Small ribosomal subunit protein uS11 | polymer | 129 | 13872.0 | 1 | UniProt (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S11 |
7 | L | Small ribosomal subunit protein uS12 | polymer | 124 | 13814.2 | 1 | UniProt (P0A7S3) Pfam (PF00164) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S12 |
8 | O | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (P0ADZ4) Pfam (PF00312) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S15 |
9 | P | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) In PDB | Escherichia coli BW25113 | Small ribosomal subunit protein bS16 |
10 | Q | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (P0AG63) Pfam (PF00366) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S17 |
11 | R | Small ribosomal subunit protein bS18 | polymer | 75 | 9005.5 | 1 | UniProt (P0A7T7) Pfam (PF01084) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S18 |
12 | T | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) In PDB | Escherichia coli BW25113 | Small ribosomal subunit protein bS20 |
13 | U | Small ribosomal subunit protein bS21 | polymer | 71 | 8524.0 | 1 | UniProt (P68679) Pfam (PF01165) In PDB | Escherichia coli BW25113 | 30S ribosomal protein S21 |
14 | a | 23S rRNA | polymer | 2904 | 941811.6 | 1 | Escherichia coli BW25113 | ||
15 | A, D, F | POTASSIUM ION | non-polymer | 39.1 | 24 | Chemie (K) | |||
16 | A | (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL | non-polymer | 449.5 | 4 | Chemie (LLL) | |||
17 | A | MAGNESIUM ION | non-polymer | 24.3 | 58 | Chemie (MG) | |||
18 | water | water | 18.0 | 1871 | Chemie (HOH) |
Sequence modifications
K: 1 - 129 (UniProt: P0A7R9)
PDB | External Database | Details |
---|---|---|
Ias 119 | Asn 119 | modified residue |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 14 |
Total formula weight | 1595657.8 | |
Non-Polymers* | Number of molecules | 86 |
Total formula weight | 4146.2 | |
All* | Total formula weight | 1599804.0 |