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8C3V

SARS-CoV-2 Delta-RBD complexed with BA.2-13 Fab and C1 nanobody

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1H, A, CBA.2-13 heavy chainpolymer23124766.83Homo sapiens
2L, B, DBA.2-13 light chainpolymer21323149.73Homo sapiens
3R, X, YSpike protein S1polymer20222935.73UniProt (P0DTC2)
Pfam (PF09408)
In PDB
Severe acute respiratory syndrome coronavirus 2
4I, J, KNanobody C1polymer13114659.13Lama glama
5Ealpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched894.81In PDB
GlyTouCan (G42466VF)
6Fbeta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched732.71In PDB
GlyTouCan (G32152BH)
7Galpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched894.81In PDB
GlyTouCan (G00395TQ)
8Y, K, A, R, I...GLYCEROLnon-polymer92.114Chemie (GOL)
9J, R2-(2-METHOXYETHOXY)ETHANOLnon-polymer120.12Chemie (PG0)
10Y, XTETRAETHYLENE GLYCOLnon-polymer194.22Chemie (PG4)
Sequence modifications
R, X, Y: 333 - 528 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
His 327-expression tag
His 328-expression tag
His 329-expression tag
His 330-expression tag
His 331-expression tag
His 332-expression tag
Arg 452Leu 452conflict
Lys 478Thr 478conflict
Lys 527Pro 527conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight256533.9
BranchedNumber of molecules3
Total formula weight2522.3
Non-Polymers*Number of molecules18
Total formula weight1918.1
All*Total formula weight260974.3
*Water molecules are not included.

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PDB entries from 2024-06-12

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