Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B | 60S ribosomal protein L1-A | polymer | 217 | 24524.8 | 1 | UniProt (P0CX43) Pfam (PF00687) In PDB | Saccharomyces cerevisiae (baker's yeast) | L10a,Large ribosomal subunit protein uL1-A |
| 2 | S5 | Rps5p | polymer | 206 | 22908.3 | 1 | UniProt (A0A1L4AA68) Pfam (PF00177) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 3 | C0 | Small ribosomal subunit protein eS10A | polymer | 96 | 11585.1 | 1 | UniProt (Q08745) Pfam (PF03501) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 4 | C4 | 40S ribosomal protein S14-B | polymer | 127 | 13446.4 | 1 | UniProt (P39516) Pfam (PF00411) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP59B,Small ribosomal subunit protein uS11-B |
| 5 | C5 | RPS15 isoform 1 | polymer | 124 | 14155.7 | 1 | UniProt (A0A6A5Q6F2) Pfam (PF00203) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 6 | C8 | 40S ribosomal protein S18-A | polymer | 145 | 16940.4 | 1 | UniProt (P0CX55) Pfam (PF00416) In PDB | Saccharomyces cerevisiae (baker's yeast) | Small ribosomal subunit protein uS13-A |
| 7 | D0 | RPS20 isoform 1 | polymer | 107 | 12190.2 | 1 | UniProt (A0A6A5PVE9) Pfam (PF00338) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 8 | D5 | 40S ribosomal protein S25 | polymer | 70 | 8001.4 | 1 | UniProt (A0A6A5PZ18) Pfam (PF03297) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 9 | D8 | RPS28A isoform 1 | polymer | 63 | 7116.3 | 1 | UniProt (A0A6A5Q700) Pfam (PF01200) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 10 | P | 60S ribosomal protein L41-A | polymer | 15 | 2108.7 | 1 | Saccharomyces cerevisiae (baker's yeast) | ||
| 11 | 3 | 5S ribosomal RNA | polymer | 121 | 38951.1 | 1 | GenBank (1329886537) | Saccharomyces cerevisiae (baker's yeast) | |
| 12 | 4 | 5.8S ribosomal RNA | polymer | 158 | 50682.9 | 1 | GenBank (1331532632) | Saccharomyces cerevisiae (baker's yeast) | |
| 13 | 1 | 25S ribosomal RNA | polymer | 3162 | 1022006.6 | 1 | Saccharomyces cerevisiae (baker's yeast) | ||
| 14 | 2 | 18S ribosomal RNA | polymer | 1737 | 559592.2 | 1 | Saccharomyces cerevisiae (baker's yeast) | ||
| 15 | S0 | Small ribosomal subunit protein uS2A | polymer | 251 | 27920.1 | 1 | UniProt (P32905) Pfam (PF00318) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 16 | S1 | Small ribosomal subunit protein eS1 | polymer | 214 | 24312.2 | 1 | UniProt (A0A6A5PRY4) Pfam (PF01015) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 17 | S2 | RPS2 isoform 1 | polymer | 217 | 23213.0 | 1 | UniProt (A0A6A5PWF7) Pfam (PF00333) Pfam (PF03719) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 18 | S3 | 40S ribosomal protein S3 | polymer | 223 | 24702.8 | 1 | UniProt (A0A6A5Q3Q1) Pfam (PF07650) Pfam (PF00189) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 19 | S6 | Small ribosomal subunit protein eS6A | polymer | 226 | 25895.1 | 1 | UniProt (P0CX37) Pfam (PF01092) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 20 | S7 | 40S ribosomal protein S7-A | polymer | 184 | 21000.5 | 1 | UniProt (P26786) Pfam (PF01251) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP30,RP40,Small ribosomal subunit protein eS7-A |
| 21 | S8 | 40S ribosomal protein S8 | polymer | 188 | 21147.2 | 1 | UniProt (A0A0J9X221) Pfam (PF01201) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 22 | S9 | Small ribosomal subunit protein uS4A | polymer | 185 | 21210.7 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 23 | C1 | Small ribosomal subunit protein uS17A | polymer | 155 | 17668.8 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 24 | C3 | 40S ribosomal protein S13 | polymer | 150 | 16928.7 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) In PDB | Saccharomyces cerevisiae (baker's yeast) | S27a,Small ribosomal subunit protein uS15,YS15 |
| 25 | C6 | 40S ribosomal protein S16-A | polymer | 141 | 15659.2 | 1 | UniProt (P0CX51) Pfam (PF00380) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP61R,Small ribosomal subunit protein uS9-A |
| 26 | C7 | ES17 | polymer | 120 | 13769.0 | 1 | UniProt (A0A0J9X224) Pfam (PF00833) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 27 | C9 | 40S ribosomal protein S19-A | polymer | 143 | 15810.9 | 1 | UniProt (P07280) Pfam (PF01090) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A |
| 28 | D1 | Small ribosomal subunit protein eS21A | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 29 | D2 | RPS22A isoform 1 | polymer | 129 | 14518.9 | 1 | UniProt (A0A6A5PSE9) Pfam (PF00410) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 30 | D3 | 40S ribosomal protein S23-A | polymer | 144 | 15942.7 | 1 | UniProt (P0CX29) Pfam (PF00164) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP37,S28,Small ribosomal subunit protein uS12-A,YS14 |
| 31 | D4 | 40S ribosomal protein S24-A | polymer | 134 | 15231.6 | 1 | UniProt (P0CX31) Pfam (PF01282) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP50,Small ribosomal subunit protein eS24-A |
| 32 | D6 | RPS26B isoform 1 | polymer | 97 | 11023.0 | 1 | UniProt (A0A6A5Q0E8) Pfam (PF01283) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 33 | D7 | 40S ribosomal protein S27-A | polymer | 81 | 8762.2 | 1 | UniProt (P35997) Pfam (PF01667) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP61,Small ribosomal subunit protein eS27-A,YS20 |
| 34 | D9 | RPS29A isoform 1 | polymer | 53 | 6335.3 | 1 | UniProt (A0A6A5PV92) Pfam (PF00253) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 35 | E0 | 40S ribosomal protein S30-A | polymer | 60 | 6779.1 | 1 | UniProt (P0CX33) Pfam (PF04758) In PDB | Saccharomyces cerevisiae (baker's yeast) | Small ribosomal subunit protein eS30-A |
| 36 | SR | Small ribosomal subunit protein RACK1 | polymer | 318 | 34710.0 | 1 | UniProt (P38011) Pfam (PF00400) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 37 | L2 | 60S ribosomal protein L2-A | polymer | 252 | 27217.3 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) In PDB | Saccharomyces cerevisiae (baker's yeast) | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 38 | L3 | 60S ribosomal protein L3 | polymer | 386 | 43719.6 | 1 | UniProt (A0A6A5Q627) Pfam (PF00297) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 39 | L4 | RPL4A isoform 1 | polymer | 361 | 39027.9 | 1 | UniProt (A0A6A5Q3W0) Pfam (PF00573) Pfam (PF14374) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 40 | L5 | RPL5 isoform 1 | polymer | 295 | 33505.5 | 1 | UniProt (A0A6A5Q0W8) Pfam (PF17144) Pfam (PF14204) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 41 | L6 | 60S ribosomal protein L6-A | polymer | 156 | 17579.7 | 1 | Saccharomyces cerevisiae (baker's yeast) | ||
| 42 | L7 | 60S ribosomal protein L7-A | polymer | 222 | 25240.4 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) In PDB | Saccharomyces cerevisiae (baker's yeast) | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 43 | L8 | 60S ribosomal protein L8-A | polymer | 233 | 25815.0 | 1 | UniProt (P17076) Pfam (PF01248) In PDB | Saccharomyces cerevisiae (baker's yeast) | L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5 |
| 44 | L9 | RPL9A isoform 1 | polymer | 189 | 21376.8 | 1 | UniProt (A0A8H4FCT7) Pfam (PF00347) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 45 | M0 | RPL10 isoform 1 | polymer | 209 | 24192.0 | 1 | UniProt (A0A6A5PUZ5) Pfam (PF00252) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 46 | M1 | RPL11B isoform 1 | polymer | 168 | 19136.9 | 1 | UniProt (A0A6A5PYM2) Pfam (PF00281) Pfam (PF00673) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 47 | M3 | 60S ribosomal protein L13-A | polymer | 193 | 21885.2 | 1 | UniProt (Q12690) Pfam (PF01294) In PDB | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL13-A |
| 48 | M4 | 60S ribosomal protein L14-A | polymer | 136 | 14976.8 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) In PDB | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL14-A |
| 49 | M5 | Ribosomal protein L15 | polymer | 202 | 24222.0 | 1 | UniProt (A0A8H4BX09) Pfam (PF00827) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 50 | M6 | 60S ribosomal protein L16-A | polymer | 197 | 22029.0 | 1 | UniProt (P26784) Pfam (PF00572) In PDB | Saccharomyces cerevisiae (baker's yeast) | L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15 |
| 51 | M7 | 60S ribosomal protein L17-A | polymer | 183 | 20458.3 | 1 | UniProt (P05740) Pfam (PF00237) In PDB | Saccharomyces cerevisiae (baker's yeast) | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 52 | M8 | 60S ribosomal protein L18-A | polymer | 185 | 20478.1 | 1 | UniProt (P0CX49) Pfam (PF17135) In PDB | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL18-A,RP28 |
| 53 | M9 | 60S ribosomal protein L19-A | polymer | 188 | 21631.1 | 1 | UniProt (P0CX82) Pfam (PF01280) In PDB | Saccharomyces cerevisiae (baker's yeast) | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 54 | N0 | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) In PDB | Saccharomyces cerevisiae (baker's yeast) | L18a,Large ribosomal subunit protein eL20-A |
| 55 | N1 | 60S ribosomal protein L21-A | polymer | 159 | 18148.1 | 1 | UniProt (Q02753) Pfam (PF01157) In PDB | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL21-A |
| 56 | N2 | 60S ribosomal protein L22-A | polymer | 100 | 11263.9 | 1 | UniProt (P05749) Pfam (PF01776) In PDB | Saccharomyces cerevisiae (baker's yeast) | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 57 | N3 | 60S ribosomal protein L23-A | polymer | 136 | 14362.8 | 1 | UniProt (P0CX41) Pfam (PF00238) In PDB | Saccharomyces cerevisiae (baker's yeast) | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 58 | N4 | RPL24A isoform 1 | polymer | 98 | 11369.4 | 1 | UniProt (A0A6A5PY83) Pfam (PF01246) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 59 | N5 | 60S ribosomal protein L25 | polymer | 121 | 13771.2 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) In PDB | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 60 | N6 | Large ribosomal subunit protein uL24A | polymer | 126 | 14134.6 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 61 | N7 | 60S ribosomal protein L27-A | polymer | 135 | 15437.2 | 1 | UniProt (P0C2H6) Pfam (PF01777) In PDB | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL27-A |
| 62 | N8 | 60S ribosomal protein L28 | polymer | 148 | 16630.5 | 1 | UniProt (P02406) Pfam (PF00828) In PDB | Saccharomyces cerevisiae (baker's yeast) | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 63 | N9 | 60S ribosomal protein L29 | polymer | 56 | 6302.3 | 1 | UniProt (A0A6A5PWR1) Pfam (PF01779) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 64 | O0 | 60S ribosomal protein L30 | polymer | 97 | 10558.3 | 1 | UniProt (P14120) Pfam (PF01248) In PDB | Saccharomyces cerevisiae (baker's yeast) | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 65 | O1 | 60S ribosomal protein L31-A | polymer | 109 | 12649.8 | 1 | UniProt (P0C2H8) Pfam (PF01198) In PDB | Saccharomyces cerevisiae (baker's yeast) | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 66 | O2 | RPL32 isoform 1 | polymer | 127 | 14478.1 | 1 | UniProt (A0A6A5Q1M9) Pfam (PF01655) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 67 | O3 | 60S ribosomal protein L33-A | polymer | 106 | 12045.9 | 1 | UniProt (P05744) Pfam (PF01247) In PDB | Saccharomyces cerevisiae (baker's yeast) | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 68 | O4 | Large ribosomal subunit protein eL34A | polymer | 111 | 12479.7 | 1 | UniProt (P87262) Pfam (PF01199) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 69 | O5 | 60S ribosomal protein L35-A | polymer | 119 | 13811.4 | 1 | UniProt (P0CX84) Pfam (PF00831) In PDB | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein uL29-A |
| 70 | O6 | 60S ribosomal protein L36-A | polymer | 99 | 11020.1 | 1 | UniProt (P05745) Pfam (PF01158) In PDB | Saccharomyces cerevisiae (baker's yeast) | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 71 | O7 | Large ribosomal subunit protein eL37A | polymer | 86 | 9675.1 | 1 | UniProt (P49166) Pfam (PF01907) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 72 | O8 | RPL38 isoform 1 | polymer | 77 | 8714.4 | 1 | UniProt (A0A6A5PUL8) Pfam (PF01781) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 73 | O9 | 60S ribosomal protein L39 | polymer | 50 | 6227.4 | 1 | UniProt (P04650) Pfam (PF00832) In PDB | Saccharomyces cerevisiae (baker's yeast) | L46,Large ribosomal subunit protein eL39,YL40 |
| 74 | Q0 | 60S ribosomal protein L40-A | polymer | 52 | 6032.3 | 1 | UniProt (P0CH08) Pfam (PF01020) In PDB | Saccharomyces cerevisiae (baker's yeast) | CEP52,Large ribosomal subunit protein eL40-A |
| 75 | Q1 | Large ribosomal subunit protein eL41B | polymer | 25 | 3354.2 | 1 | UniProt (P0CX87) Pfam (PF05162) In PDB | Saccharomyces cerevisiae (baker's yeast) | 60S ribosomal protein L41-B,L47,YL41 |
| 76 | Q2 | 60S ribosomal protein L42-A | polymer | 105 | 12115.5 | 1 | UniProt (P0CX27) Pfam (PF00935) In PDB | Saccharomyces cerevisiae (baker's yeast) | L41,Large ribosomal subunit protein eL42-A,YL27,YP44 |
| 77 | Q3 | 60S ribosomal protein L43-A | polymer | 91 | 9981.8 | 1 | UniProt (P0CX25) Pfam (PF01780) In PDB | Saccharomyces cerevisiae (baker's yeast) | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 78 | SM | STM1 isoform 1 | polymer | 118 | 12767.0 | 1 | UniProt (A0A8H4FBL9) Pfam (PF09598) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 79 | eI | Eukaryotic translation initiation factor 5A | polymer | 145 | 15741.9 | 1 | UniProt (A0A8H8ULI0) Pfam (PF21485) Pfam (PF01287) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 80 | S4 | Small ribosomal subunit protein eS4A | polymer | 260 | 29338.1 | 1 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 81 | E1 | RPS31 isoform 1 | polymer | 71 | 8101.7 | 1 | UniProt (A0A6A5PU37) Pfam (PF01599) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 82 | 1, 3, L3, 4, 2... | MAGNESIUM ION | non-polymer | 24.3 | 220 | Chemie (MG) | |||
| 83 | 1, L2, L4, 2, M0... | POTASSIUM ION | non-polymer | 39.1 | 72 | Chemie (K) | |||
| 84 | 1 | 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione | non-polymer | 281.3 | 1 | Chemie (3HE) | |||
| 85 | 1 | SPERMIDINE | non-polymer | 145.2 | 3 | Chemie (SPD) | |||
| 86 | D6, D9, O4, O7, Q0... | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
| 87 | water | water | 18.0 | 1810 | Chemie (HOH) |
Sequence modifications
C0: 1 - 96 (UniProt: Q08745)
C1: 2 - 156 (UniProt: P0CX47)
M0: 2 - 219 (UniProt: A0A6A5PUZ5)
| PDB | External Database | Details |
|---|---|---|
| Ala 89 | Gly 89 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 147 | Gly 147 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | Leu 103 | deletion |
| - | Ser 104 | deletion |
| - | Cys 105 | deletion |
| - | Ala 106 | deletion |
| - | Gly 107 | deletion |
| - | Ala 108 | deletion |
| - | Asp 109 | deletion |
| - | Arg 110 | deletion |
| - | Leu 111 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 81 |
| Total formula weight | 2969992.9 | |
| Non-Polymers* | Number of molecules | 303 |
| Total formula weight | 9337.1 | |
| All* | Total formula weight | 2979330.0 |
