7YR3
SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state2)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B, C, F | Spike glycoprotein | polymer | 1270 | 141125.5 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | D, G | Angiotensin-converting enzyme 2 | polymer | 603 | 69982.6 | 2 | UniProt (Q9BYF1) Pfam (PF01401) In PDB | Homo sapiens (human) | ACE-related carboxypeptidase,Angiotensin-converting enzyme homolog,ACEH,Metalloprotease MPROT15 |
3 | A, E, H, I, J... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
4 | B, F, C, G, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 53 | Chemie (NAG) | |||
5 | G, D | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
6 | G, D | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
7 | water | water | 18.0 | 142 | Chemie (HOH) |
Sequence modifications
B, C, F: 4 - 1273 (UniProt: P0DTC2)
D, G: 19 - 615 (UniProt: Q9BYF1)
PDB | External Database | Details |
---|---|---|
Ile 22 | Thr 19 | variant |
- | Leu 24 | deletion |
- | Pro 25 | deletion |
- | Pro 26 | deletion |
Ser 27 | Ala 27 | variant |
Asp 142 | Gly 142 | variant |
Glu 147 | Lys 147 | variant |
Arg 152 | Trp 152 | variant |
Leu 157 | Phe 157 | variant |
Val 210 | Ile 210 | variant |
Gly 213 | Val 213 | variant |
Ser 257 | Gly 257 | variant |
His 339 | Gly 339 | variant |
Phe 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ala 376 | Thr 376 | variant |
Asn 405 | Asp 405 | variant |
Ser 408 | Arg 408 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Ser 446 | Gly 446 | variant |
Lys 460 | Asn 460 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Gly 614 | Asp 614 | variant |
Tyr 655 | His 655 | variant |
Lys 679 | Asn 679 | variant |
His 681 | Pro 681 | variant |
Ala 683 | Arg 683 | engineered mutation |
Ala 685 | Arg 685 | engineered mutation |
Lys 764 | Asn 764 | variant |
Tyr 796 | Asp 796 | variant |
Pro 817 | Phe 817 | engineered mutation |
Pro 892 | Ala 892 | engineered mutation |
Pro 899 | Ala 899 | engineered mutation |
Pro 942 | Ala 942 | engineered mutation |
His 954 | Gln 954 | variant |
Lys 969 | Asn 969 | variant |
Pro 986 | Lys 986 | engineered mutation |
Pro 987 | Val 987 | engineered mutation |
PDB | External Database | Details |
---|---|---|
His 616 | - | expression tag |
His 617 | - | expression tag |
His 618 | - | expression tag |
His 619 | - | expression tag |
His 620 | - | expression tag |
His 621 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 563341.8 | |
Branched | Number of molecules | 9 |
Total formula weight | 3819.6 | |
Non-Polymers* | Number of molecules | 57 |
Total formula weight | 11925.7 | |
All* | Total formula weight | 579087.1 |