7VOP
Cryo-EM structure of Xenopus laevis nuclear pore complex cytoplasmic ring subunit
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, J | Nuclear pore complex protein Nup85 | polymer | 653 | 75160.0 | 2 | UniProt (Q68FJ0) Pfam (PF07575) In PDB | Xenopus laevis (African clawed frog) | 85 kDa nucleoporin,Nucleoporin Nup85 |
| 2 | B, K | MGC154553 protein | polymer | 375 | 41744.5 | 2 | UniProt (Q05AW3) Pfam (PF00400) In PDB | Xenopus laevis (African clawed frog) | outer Nup43 |
| 3 | C, L | Nucleoporin SEH1-A | polymer | 360 | 39777.6 | 2 | UniProt (Q4FZW5) Pfam (PF00400) In PDB | Xenopus laevis (African clawed frog) | GATOR complex protein SEH1-A,Nup107-160 subcomplex subunit seh1-A |
| 4 | D, M | Nucleoporin 160kDa | polymer | 1414 | 160427.5 | 2 | UniProt (A0A6I8QA34) Pfam (PF11715) In PDB | Xenopus laevis (African clawed frog) | |
| 5 | E, N | MGC83926 protein | polymer | 326 | 36588.6 | 2 | UniProt (Q66IZ6) Pfam (PF00400) In PDB | Xenopus laevis (African clawed frog) | |
| 6 | F, O | Nuclear pore complex protein Nup96 | polymer | 924 | 104742.8 | 2 | UniProt (A0A1B8XZT4) Pfam (PF12110) In PDB | Xenopus laevis (African clawed frog) | Nuclear pore complex protein Nup98,Nuclear pore complex protein Nup98-Nup96,Nucleoporin Nup96,Nucleoporin Nup98 |
| 7 | G, P | GATOR complex protein SEC13 | polymer | 320 | 35315.3 | 2 | UniProt (Q7ZYJ8) Pfam (PF00400) In PDB | Xenopus laevis (African clawed frog) | Protein SEC13 homolog |
| 8 | H, Q | Nuclear pore complex protein | polymer | 916 | 105398.5 | 2 | UniProt (A2RV69) Pfam (PF04121) In PDB | Xenopus laevis (African clawed frog) | |
| 9 | I, R | outer Nup133 | polymer | 1140 | 127551.3 | 2 | UniProt (A0A1L8H1I9) Pfam (PF08801) Pfam (PF03177) In PDB | Xenopus laevis (African clawed frog) | |
| 10 | S, T | MGC83295 protein | polymer | 2011 | 227854.1 | 2 | UniProt (Q642R6) Pfam (PF11894) In PDB | Xenopus laevis (African clawed frog) | |
| 11 | U | Nuclear pore complex protein Nup93 | polymer | 820 | 93565.2 | 1 | UniProt (Q7ZX96) Pfam (PF04097) In PDB | Xenopus laevis (African clawed frog) | 93 kDa nucleoporin,An4a,Nucleoporin Nup93 |
| 12 | V, W, X, Y, Z | Nup358 | polymer | 2931 | 325736.6 | 5 | UniProt (A0A1L8HGL2) Pfam (PF00638) Pfam (PF00641) Pfam (PF12185) In PDB | Xenopus laevis (African clawed frog) | |
| 13 | a, e | Nucleoporin CAN | polymer | 2037 | 209080.4 | 2 | UniProt (Q9PVZ2) In PDB | Xenopus laevis (African clawed frog) | |
| 14 | b, d | Nup88A protein | polymer | 728 | 82573.1 | 2 | UniProt (Q4KLQ6) Pfam (PF10168) In PDB | Xenopus laevis (African clawed frog) | |
| 15 | c, f | IL4I1 protein | polymer | 547 | 55969.5 | 2 | UniProt (Q91349) Pfam (PF05064) In PDB | Xenopus laevis (African clawed frog) | Nuclear pore complex glycoprotein p62 |
Sequence modifications
V, W, X, Y, Z: 1 - 2931 (UniProt: A0A1L8HGL2)
| PDB | External Database | Details |
|---|---|---|
| Gly 2480 | - | insertion |
| Phe 2481 | - | insertion |
| Asn 2482 | - | insertion |
| Phe 2483 | - | insertion |
| Ser 2484 | - | insertion |
| Leu 2485 | - | insertion |
| Phe 2486 | - | insertion |
| Lys 2487 | - | insertion |
| Ser 2488 | - | insertion |
| Asn 2489 | - | insertion |
| Pro 2490 | - | insertion |
| Arg 2491 | - | insertion |
| Ala 2492 | - | insertion |
| Phe 2493 | - | insertion |
| Trp 2494 | - | insertion |
| Thr 2495 | - | insertion |
| Cys 2496 | - | insertion |
| Thr 2497 | - | insertion |
| Ser 2498 | - | insertion |
| Ser 2499 | - | insertion |
| Ser 2500 | - | insertion |
| Lys 2501 | - | insertion |
| Pro 2502 | - | insertion |
| Glu 2503 | - | insertion |
| Val 2504 | - | insertion |
| Glu 2505 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 32 |
| Total formula weight | 4326615.0 | |
| All* | Total formula weight | 4326615.0 |
