7UXC
cryo-EM structure of the mTORC1-TFEB-Rag-Ragulator complex with symmetry expansion
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Serine/threonine-protein kinase mTOR | polymer | 2549 | 289258.0 | 1 | UniProt (P42345) Pfam (PF11865) Pfam (PF02259) Pfam (PF08771) Pfam (PF00454) Pfam (PF02260) In PDB | Homo sapiens (human) | FK506-binding protein 12-rapamycin complex-associated protein 1,FKBP12-rapamycin complex-associated protein,Mammalian target of rapamycin,mTOR,Mechanistic target of rapamycin,Rapamycin and FKBP12 target 1,Rapamycin target protein 1 |
2 | B | Target of rapamycin complex subunit LST8 | polymer | 326 | 35910.1 | 1 | UniProt (Q9BVC4) Pfam (PF00400) In PDB | Homo sapiens (human) | TORC subunit LST8,G protein beta subunit-like,Protein GbetaL,Mammalian lethal with SEC13 protein 8,mLST8 |
3 | C | Regulatory-associated protein of mTOR | polymer | 1335 | 149200.0 | 1 | UniProt (Q8N122) Pfam (PF14538) Pfam (PF02985) Pfam (PF00400) In PDB | Homo sapiens (human) | Raptor,p150 target of rapamycin (TOR)-scaffold protein |
4 | D, K | Ras-related GTP-binding protein A | polymer | 313 | 36600.2 | 2 | UniProt (Q7L523) Pfam (PF04670) In PDB | Homo sapiens (human) | Rag A,RagA,Adenovirus E3 14.7 kDa-interacting protein 1,FIP-1 |
5 | E, L | Ras-related GTP-binding protein C | polymer | 399 | 44298.9 | 2 | UniProt (Q9HB90) Pfam (PF04670) In PDB | Homo sapiens (human) | RagC,GTPase-interacting protein 2,TIB929 |
6 | F, M | Ragulator complex protein LAMTOR1 | polymer | 161 | 17762.8 | 2 | UniProt (Q6IAA8) Pfam (PF15454) In PDB | Homo sapiens (human) | Late endosomal/lysosomal adaptor and MAPK and MTOR activator 1,Lipid raft adaptor protein p18,Protein associated with DRMs and endosomes,p27Kip1-releasing factor from RhoA,p27RF-Rho |
7 | G, N | Ragulator complex protein LAMTOR2 | polymer | 125 | 13517.5 | 2 | UniProt (Q9Y2Q5) Pfam (PF03259) In PDB | Homo sapiens (human) | Endosomal adaptor protein p14,Late endosomal/lysosomal Mp1-interacting protein,Late endosomal/lysosomal adaptor and MAPK and MTOR activator 2,Mitogen-activated protein-binding protein-interacting protein,MAPBP-interacting protein,Roadblock domain-containing protein 3 |
8 | H, O | Ragulator complex protein LAMTOR3 | polymer | 124 | 13637.7 | 2 | UniProt (Q9UHA4) Pfam (PF08923) In PDB | Homo sapiens (human) | Late endosomal/lysosomal adaptor and MAPK and MTOR activator 3,MEK-binding partner 1,Mp1,Mitogen-activated protein kinase kinase 1-interacting protein 1,Mitogen-activated protein kinase scaffold protein 1 |
9 | I, P | Ragulator complex protein LAMTOR4 | polymer | 99 | 10753.2 | 2 | UniProt (Q0VGL1) In PDB | Homo sapiens (human) | Late endosomal/lysosomal adaptor and MAPK and MTOR activator 4 |
10 | J, Q | Ragulator complex protein LAMTOR5 | polymer | 91 | 9622.9 | 2 | UniProt (O43504) Pfam (PF16672) In PDB | Homo sapiens (human) | Hepatitis B virus X-interacting protein,HBX-interacting protein,Late endosomal/lysosomal adaptor and MAPK and MTOR activator 5 |
11 | R | Transcription factor EB | polymer | 476 | 52926.6 | 1 | UniProt (P19484) Pfam (PF15951) Pfam (PF00010) Pfam (PF11851) In PDB | Homo sapiens (human) | Class E basic helix-loop-helix protein 35,bHLHe35 |
12 | A | INOSITOL HEXAKISPHOSPHATE | non-polymer | 660.0 | 1 | Chemie (IHP) | |||
13 | D, K | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 2 | Chemie (GTP) | |||
14 | D, K | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
15 | E, L | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 2 | Chemie (GDP) |
Sequence modifications
D, K: 1 - 313 (UniProt: Q7L523)
E, L: 1 - 399 (UniProt: Q9HB90)
PDB | External Database | Details |
---|---|---|
Leu 66 | Gln 66 | conflict |
PDB | External Database | Details |
---|---|---|
Asn 75 | Ser 75 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 18 |
Total formula weight | 819680.9 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 2641.4 | |
All* | Total formula weight | 822322.3 |