Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7SYS

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1218S rRNApolymer1870603100.91Oryctolagus cuniculus (rabbit)
2AEukaryotic translation initiation factor 1A, X-chromosomalpolymer14416488.41UniProt (P47813)
Pfam (PF01176)
In PDB		Homo sapiens (human)eIF-1A X isoform,Eukaryotic translation initiation factor 4C,eIF-4C
3BuS2 (SA)polymer29532958.01UniProt (G1TLT8)
Pfam (PF00318)
Pfam (PF16122)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein SA, 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
4CeS1polymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S3a
5DuS5polymer22124441.81UniProt (by SIFTS) (G1SV32)
In PDB		Oryctolagus cuniculus (rabbit)
6EuS3polymer28131146.61UniProt (G1TNM3)
Pfam (PF00189)
Pfam (PF07650)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein S3
7FeS4 (S4 X isoform)polymer26329654.91UniProt (G1TK17)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
UniProt (by SIFTS) (G1TA47)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S4
8GuS7polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S5
9HeS6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)
UniProt (by SIFTS) (A0A5K1UJS7)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S6
10IeS7polymer43247356.21UniProt (G1SVB0)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S7
11JeS8polymer20824263.41UniProt (G1TJW1)
Pfam (PF01201)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S8
12KuS4polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein S9
13LeS10polymer14917156.91UniProt (G1TPV3)
Pfam (PF03501)
In PDB		Oryctolagus cuniculus (rabbit)
14MuS17polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S11
15NeS12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S12
16OuS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein S13
17PuS11polymer16818134.01UniProt (G1U472)
UniProt (by SIFTS) (G1T1F0)
Pfam (PF00411)
In PDB		Oryctolagus cuniculus (rabbit)
18QuS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S15
19RuS9polymer17219213.51UniProt (G1SGX4)
Pfam (PF00380)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein S16
20SeS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S17
21TuS13polymer15217759.81UniProt (G1TPG3)
Pfam (PF00416)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S18
22UeS19polymer14516235.81UniProt (G1TN62)
Pfam (PF01090)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S19
23VuS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB		Oryctolagus cuniculus (rabbit)
24WeS21polymer839124.41UniProt (G1TM82)
Pfam (PF01249)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S21
25XuS8polymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB		Oryctolagus cuniculus (rabbit)40S Ribosomal protein S15a
26YuS12polymer14315844.71UniProt (G1SZ47)
Pfam (PF00164)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S23
27ZeS24polymer13115237.11UniProt (G1T3D8)
Pfam (PF01282)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S24
28aeS25polymer12413645.01UniProt (G1TDB3)
Pfam (PF03297)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S25
29beS26polymer10111645.81UniProt (G1TFE8)
Pfam (PF01283)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S26
30ceS27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S27
31deS28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB		Oryctolagus cuniculus (rabbit)40S Ribosomal protein S28
32euS14polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S29
33feS30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S30
34geS31polymer18821431.71UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S27a, Ubiquitin carboxyl extension protein 80,Ubiquitin-40S ribosomal protein S27a
35hReceptor for Activated C Kinase 1 (RACK1)polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)
In PDB		Oryctolagus cuniculus (rabbit)
36jEukaryotic translation initiation factor 2 subunit 1polymer31536161.21UniProt (P05198)
Pfam (PF00575)
Pfam (PF07541)
In PDB		Homo sapiens (human)Eukaryotic translation initiation factor 2 subunit alpha,eIF-2alpha
37neL41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB		Oryctolagus cuniculus (rabbit)60s ribosomal protein l41
38zHCV IRESpolymer400128746.11GenBank (149384897)Hepatitis C virus (isolate 1)
39iMet-tRNA-i-Metpolymer7524231.51GenBank (174924)Oryctolagus cuniculus (rabbit)
40bZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
B: 1 - 295 (UniProt: G1TLT8)
PDBExternal DatabaseDetails
Thr 114Ala 114conflict
F: 1 - 263 (UniProt: G1TK17)
PDBExternal DatabaseDetails
Gly 25Ser 25conflict
Arg 51Lys 51conflict
Thr 78Ala 78conflict
Val 156Met 156conflict
J: 1 - 208 (UniProt: G1TJW1)
PDBExternal DatabaseDetails
Arg 47Gly 47conflict
W: 1 - 83 (UniProt: G1TM82)
PDBExternal DatabaseDetails
Asn 3Ser 3conflict
Asp 4Asn 4conflict
Gln 33Pro 33conflict
Phe 50Ser 50conflict
Ala 75Ser 75conflict
Asp 76His 76conflict
Lys 81Gln 81conflict
b: 2 - 102 (UniProt: G1TFE8)
PDBExternal DatabaseDetails
Arg 28Cys 28conflict
Ala 56Val 56conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains39
Total formula weight1466533.5
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight1466599.0
*Water molecules are not included.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon