Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7SYN

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1218S rRNApolymer1870603100.91Oryctolagus cuniculus (rabbit)
2BuS2 (SA)polymer29532958.01UniProt (G1TLT8)
Pfam (PF00318)
Pfam (PF16122)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein SA, 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
3CeS1polymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S3a
4D40S ribosomal protein S2polymer22124441.81UniProt (G1TUT9)
In PDB		Oryctolagus cuniculus (rabbit)
5EuS3polymer28131146.61UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein S3
6FeS4 (S4 X isoform)polymer26329654.91UniProt (G1TK17)
Pfam (PF16121)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
UniProt (by SIFTS) (G1TA47)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S4
7GuS7polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S5
8HeS6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)
UniProt (by SIFTS) (A0A5K1UJS7)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S6
9IeS7polymer43247356.21UniProt (G1SVB0)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S7
10JeS8polymer20824263.41UniProt (G1TJW1)
Pfam (PF01201)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S8
11KuS4polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein S9
12LeS10polymer14917156.91UniProt (G1TPV3)
Pfam (PF03501)
In PDB		Oryctolagus cuniculus (rabbit)
13MuS17polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S11
14NeS12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S12
15OuS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein S13
16PuS11polymer16818134.01UniProt (G1U472)
Pfam (PF00411)
UniProt (by SIFTS) (G1T1F0)
In PDB		Oryctolagus cuniculus (rabbit)
17QuS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S15
18RuS9polymer17219213.51UniProt (G1SGX4)
Pfam (PF00380)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein S16
19SeS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S17
20TuS13polymer15217759.81UniProt (G1TPG3)
Pfam (PF00416)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S18
21UeS19polymer14516235.81UniProt (G1TN62)
Pfam (PF01090)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S19
22VuS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S20
23WeS21polymer839124.41UniProt (G1TM82)
Pfam (PF01249)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S21
24XuS8polymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB		Oryctolagus cuniculus (rabbit)40S Ribosomal protein S15a
25YuS12polymer14315844.71UniProt (G1SZ47)
Pfam (PF00164)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S23
26ZeS24polymer13115237.11UniProt (G1T3D8)
Pfam (PF01282)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S24
27aeS25polymer12413645.01UniProt (G1TDB3)
Pfam (PF03297)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S25
28beS26polymer10111645.81UniProt (G1TFE8)
Pfam (PF01283)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S26
29ceS27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S27
30deS28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB		Oryctolagus cuniculus (rabbit)40S Ribosomal protein S28
31euS14polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S29
32feS30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S30
33geS31polymer18821431.71UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)
In PDB		Oryctolagus cuniculus (rabbit)40S ribosomal protein S27a, Ubiquitin carboxyl extension protein 80,Ubiquitin-40S ribosomal protein S27a
34hReceptor for Activated C Kinase 1 (RACK1)polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)
In PDB		Oryctolagus cuniculus (rabbit)
35neL41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB		Oryctolagus cuniculus (rabbit)60s ribosomal protein l41
36zHCV IRESpolymer400128746.11GenBank (149384897)Hepatitis C virus (isolate 1)
37b, gZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
B: 1 - 295 (UniProt: G1TLT8)
PDBExternal DatabaseDetails
Thr 114Ala 114conflict
D: 58 - 278 (UniProt: G1TUT9)
PDBExternal DatabaseDetails
Met 73Val 50conflict
Ser 101Ala 78conflict
Gly 119Ala 96conflict
Arg 194His 171conflict
Met 215Leu 192conflict
Arg 227Trp 204conflict
Gly 228Ser 205conflict
F: 1 - 263 (UniProt: G1TK17)
PDBExternal DatabaseDetails
Gly 25Ser 25conflict
Arg 51Lys 51conflict
Thr 78Ala 78conflict
Val 156Met 156conflict
J: 1 - 208 (UniProt: G1TJW1)
PDBExternal DatabaseDetails
Arg 47Gly 47conflict
W: 1 - 83 (UniProt: G1TM82)
PDBExternal DatabaseDetails
Asn 3Ser 3conflict
Asp 4Asn 4conflict
Gln 33Pro 33conflict
Phe 50Ser 50conflict
Ala 75Ser 75conflict
Asp 76His 76conflict
Lys 81Gln 81conflict
b: 2 - 102 (UniProt: G1TFE8)
PDBExternal DatabaseDetails
Arg 28Cys 28conflict
Ala 56Val 56conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains36
Total formula weight1389652.4
Non-Polymers*Number of molecules2
Total formula weight130.8
All*Total formula weight1389783.2
*Water molecules are not included.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon