7SGD
Lassa virus glycoprotein construct(Josiah GPCysR4) recovered from GPC-I53-50 nanoparticle by localized reconstruction
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, a, B, b, C... | Josiah GPCysR4 I53-50A | polymer | 665 | 73845.6 | 6 | UniProt (Q6GWS0) Pfam (PF00798) UniProt (by SIFTS) (P08669) In PDB | Lassa mammarenavirus | |
2 | Y, Z, d, f, D... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 18 | In PDB GlyTouCan (G42666HT) | |||
3 | X, F, O | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
4 | e, J, S | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
5 | g, L, U | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
6 | A, a, B, b, C... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) |
Sequence modifications
A, a, B, b, C, c: 1 - 423 (UniProt: Q6GWS0)
A, a, B, b, C, c: 424 - 665 (PDB: 7SGD)
PDB | External Database | Details |
---|---|---|
Cys 207 | Arg 207 | conflict |
Arg 258 | Leu 258 | conflict |
Arg 259 | Leu 259 | conflict |
Pro 329 | Glu 329 | conflict |
Cys 360 | Gly 360 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 443073.4 | |
Branched | Number of molecules | 27 |
Total formula weight | 13842.9 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 1327.2 | |
All* | Total formula weight | 458243.6 |