7QGG
Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | S2 | RNA (1872-MER) | polymer | 1872 | 604241.2 | 1 | Rattus norvegicus (Norway rat) | ||
| 2 | SA | 40S ribosomal protein SA | polymer | 295 | 32853.9 | 1 | UniProt (P38983) Pfam (PF00318) Pfam (PF16122) In PDB | Rattus norvegicus (Norway rat) | 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40 |
| 3 | SB | 40S ribosomal protein S3a | polymer | 264 | 30002.1 | 1 | UniProt (P49242) Pfam (PF01015) In PDB | Rattus norvegicus (Norway rat) | V-fos transformation effector protein |
| 4 | SD | 40S ribosomal protein S3 | polymer | 243 | 26715.3 | 1 | UniProt (P62909) Pfam (PF07650) Pfam (PF00189) In PDB | Rattus norvegicus (Norway rat) | |
| 5 | SE | 40S ribosomal protein S4, X isoform | polymer | 263 | 29654.9 | 1 | UniProt (P62703) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Rattus norvegicus (Norway rat) | |
| 6 | SF | 40S ribosomal protein S5 | polymer | 204 | 22943.5 | 1 | UniProt (B0BN81) Pfam (PF00177) In PDB | Rattus norvegicus (Norway rat) | Ribosomal protein S5,isoform CRA_b,Rps5 protein |
| 7 | SH | 40S ribosomal protein S7 | polymer | 194 | 22168.9 | 1 | UniProt (P62083) Pfam (PF01251) In PDB | Rattus norvegicus (Norway rat) | S8 |
| 8 | SI | 40S ribosomal protein S8 | polymer | 208 | 24263.4 | 1 | UniProt (P62243) Pfam (PF01201) In PDB | Rattus norvegicus (Norway rat) | |
| 9 | SK | 40S ribosomal protein S10 | polymer | 165 | 18951.8 | 1 | UniProt (P63326) Pfam (PF03501) In PDB | Rattus norvegicus (Norway rat) | |
| 10 | SL | 40S ribosomal protein S11 | polymer | 158 | 18468.8 | 1 | UniProt (A0A8B8VW69) Pfam (PF16205) Pfam (PF00366) In PDB | Rattus norvegicus (Norway rat) | |
| 11 | SP | 40S ribosomal protein S15 | polymer | 145 | 17076.2 | 1 | UniProt (A0A2K6QL61) Pfam (PF00203) In PDB | Rattus norvegicus (Norway rat) | |
| 12 | SQ | Rps16 protein | polymer | 146 | 16477.4 | 1 | UniProt (Q5XFV9) Pfam (PF00380) In PDB | Rattus norvegicus (Norway rat) | |
| 13 | SR | 40S ribosomal protein S17 | polymer | 135 | 15537.0 | 1 | UniProt (P04644) Pfam (PF00833) In PDB | Rattus norvegicus (Norway rat) | |
| 14 | SS | 40S ribosomal protein S18 | polymer | 152 | 17759.8 | 1 | UniProt (H0WTR0) Pfam (PF00416) In PDB | Rattus norvegicus (Norway rat) | |
| 15 | ST | 40S ribosomal protein S19 | polymer | 145 | 16117.6 | 1 | UniProt (P17074) Pfam (PF01090) In PDB | Rattus norvegicus (Norway rat) | |
| 16 | SU | 40S ribosomal protein S20 | polymer | 119 | 13398.8 | 1 | UniProt (P60868) Pfam (PF00338) In PDB | Rattus norvegicus (Norway rat) | |
| 17 | SV | 40S ribosomal protein S21 | polymer | 83 | 9140.4 | 1 | UniProt (P05765) Pfam (PF01249) In PDB | Rattus norvegicus (Norway rat) | |
| 18 | SX | 40S ribosomal protein S23 | polymer | 143 | 15844.7 | 1 | UniProt (A0A340WVW7) Pfam (PF00164) In PDB | Rattus norvegicus (Norway rat) | |
| 19 | Sa | 40S ribosomal protein S26 | polymer | 115 | 13047.5 | 1 | UniProt (A0A2K5LQY6) Pfam (PF01283) In PDB | Rattus norvegicus (Norway rat) | |
| 20 | Sc | 40S ribosomal protein S28 | polymer | 69 | 7855.1 | 1 | UniProt (A0A3M0JHZ8) Pfam (PF01200) In PDB | Rattus norvegicus (Norway rat) | |
| 21 | Sd | 40S ribosomal protein S29 | polymer | 56 | 6690.8 | 1 | UniProt (A0A2J8WKD7) Pfam (PF00253) In PDB | Rattus norvegicus (Norway rat) | |
| 22 | Sg | Receptor of activated protein C kinase 1 | polymer | 317 | 35115.7 | 1 | UniProt (A0A2K6K8B0) Pfam (PF00400) In PDB | Rattus norvegicus (Norway rat) | |
| 23 | SC | 40S ribosomal protein S2 | polymer | 293 | 31283.4 | 1 | UniProt (P27952) Pfam (PF00333) Pfam (PF03719) In PDB | Rattus norvegicus (Norway rat) | |
| 24 | SG | 40S ribosomal protein S6 | polymer | 249 | 28751.9 | 1 | UniProt (P62755) Pfam (PF01092) In PDB | Rattus norvegicus (Norway rat) | |
| 25 | SJ | 40S ribosomal protein S9 | polymer | 194 | 22641.6 | 1 | UniProt (A0A6J0B498) Pfam (PF00163) Pfam (PF01479) In PDB | Rattus norvegicus (Norway rat) | |
| 26 | SM | 40S ribosomal protein S12 | polymer | 132 | 14549.0 | 1 | UniProt (P63324) Pfam (PF01248) In PDB | Rattus norvegicus (Norway rat) | |
| 27 | SN | 40S ribosomal protein S13 | polymer | 151 | 17259.4 | 1 | UniProt (A0A663F1C0) Pfam (PF08069) Pfam (PF00312) In PDB | Rattus norvegicus (Norway rat) | |
| 28 | SO | 40S ribosomal protein S14 | polymer | 151 | 16288.7 | 1 | UniProt (P13471) Pfam (PF00411) In PDB | Rattus norvegicus (Norway rat) | |
| 29 | SW | 40S ribosomal protein S15a | polymer | 130 | 14865.6 | 1 | UniProt (A0A2K5QKS6) Pfam (PF00410) In PDB | Rattus norvegicus (Norway rat) | |
| 30 | SY | 40S ribosomal protein S24 | polymer | 133 | 15463.3 | 1 | UniProt (P62850) Pfam (PF01282) In PDB | Rattus norvegicus (Norway rat) | |
| 31 | SZ | 40S ribosomal protein S25 | polymer | 125 | 13776.2 | 1 | UniProt (A0A6J3IG71) Pfam (PF03297) In PDB | Rattus norvegicus (Norway rat) | |
| 32 | Sb | 40S ribosomal protein S27 | polymer | 84 | 9480.2 | 1 | UniProt (A0A7J8BG50) Pfam (PF01667) In PDB | Rattus norvegicus (Norway rat) | |
| 33 | Se | Ubiquitin-like domain-containing protein | polymer | 59 | 6668.9 | 1 | UniProt (A0A2K6U587) Pfam (PF04758) In PDB | Rattus norvegicus (Norway rat) | |
| 34 | Sf | Ubiquitin-40S ribosomal protein S27a | polymer | 156 | 17990.0 | 1 | UniProt (P62982) Pfam (PF00240) Pfam (PF01599) In PDB | Rattus norvegicus (Norway rat) | Ubiquitin carboxyl extension protein 80 |
| 35 | A | 60S ribosomal protein L8 | polymer | 257 | 28088.9 | 1 | UniProt (A0A8B8VPA8) Pfam (PF00181) Pfam (PF03947) In PDB | Rattus norvegicus (Norway rat) | |
| 36 | B | 60S ribosomal protein L3 | polymer | 403 | 46238.2 | 1 | UniProt (P21531) Pfam (PF00297) In PDB | Rattus norvegicus (Norway rat) | L4 |
| 37 | C | 60S ribosomal protein L4 | polymer | 421 | 47363.1 | 1 | UniProt (P50878) Pfam (PF00573) Pfam (PF14374) In PDB | Rattus norvegicus (Norway rat) | 60S ribosomal protein L1 |
| 38 | D | RNA (157-MER) | polymer | 157 | 50449.8 | 1 | GenBank (57148) | Rattus norvegicus (Norway rat) | |
| 39 | E | RNA (121-MER) | polymer | 121 | 38998.1 | 1 | GenBank (793860) | Rattus norvegicus (Norway rat) | |
| 40 | F | 60S ribosomal protein L5 | polymer | 297 | 34522.8 | 1 | UniProt (P09895) Pfam (PF17144) Pfam (PF14204) In PDB | Rattus norvegicus (Norway rat) | |
| 41 | G | 60S ribosomal protein L6 | polymer | 298 | 33644.9 | 1 | UniProt (P21533) Pfam (PF01159) Pfam (PF03868) In PDB | Rattus norvegicus (Norway rat) | Neoplasm-related protein C140 |
| 42 | H | 60S ribosomal protein L7 | polymer | 260 | 30399.5 | 1 | UniProt (P05426) Pfam (PF08079) Pfam (PF00327) In PDB | Rattus norvegicus (Norway rat) | |
| 43 | I | 60S ribosomal protein L7a | polymer | 266 | 30061.8 | 1 | UniProt (P62425) Pfam (PF01248) In PDB | Rattus norvegicus (Norway rat) | |
| 44 | J | 60S ribosomal protein L9 | polymer | 192 | 21929.5 | 1 | UniProt (P17077) Pfam (PF00347) In PDB | Rattus norvegicus (Norway rat) | |
| 45 | K | 60S ribosomal protein L10 | polymer | 214 | 24657.1 | 1 | UniProt (Q6PDV7) Pfam (PF00252) In PDB | Rattus norvegicus (Norway rat) | Ribosomal protein L10 |
| 46 | L | 60S ribosomal protein L11 | polymer | 178 | 20288.5 | 1 | UniProt (P62914) Pfam (PF00281) Pfam (PF00673) In PDB | Rattus norvegicus (Norway rat) | |
| 47 | M | 60S ribosomal protein L13 | polymer | 211 | 24368.7 | 1 | UniProt (P41123) Pfam (PF01294) In PDB | Rattus norvegicus (Norway rat) | |
| 48 | N | 60S ribosomal protein L14 | polymer | 214 | 23394.0 | 1 | UniProt (Q63507) Pfam (PF01929) In PDB | Rattus norvegicus (Norway rat) | |
| 49 | O | Ribosomal protein L15 | polymer | 204 | 24207.3 | 1 | UniProt (L8Y0W1) Pfam (PF00827) In PDB | Rattus norvegicus (Norway rat) | |
| 50 | P | 60S ribosomal protein L13a | polymer | 203 | 23501.3 | 1 | UniProt (Q5RK10) Pfam (PF00572) In PDB | Rattus norvegicus (Norway rat) | |
| 51 | Q | 60S ribosomal protein L17 | polymer | 184 | 21444.2 | 1 | UniProt (A0A8J4KQ25) Pfam (PF00237) In PDB | Rattus norvegicus (Norway rat) | |
| 52 | R | 60S ribosomal protein L18 | polymer | 188 | 21712.8 | 1 | UniProt (P12001) Pfam (PF17135) In PDB | Rattus norvegicus (Norway rat) | |
| 53 | S | Ribosomal protein L19 | polymer | 196 | 23535.3 | 1 | UniProt (A0A2J8KH59) Pfam (PF01280) In PDB | Rattus norvegicus (Norway rat) | |
| 54 | T | 60S ribosomal protein L18a | polymer | 176 | 20778.5 | 1 | UniProt (P62718) Pfam (PF01775) In PDB | Rattus norvegicus (Norway rat) | |
| 55 | U | 60S ribosomal protein L21 | polymer | 160 | 18624.0 | 1 | UniProt (Q6PDW2) Pfam (PF01157) In PDB | Rattus norvegicus (Norway rat) | |
| 56 | V | 60S ribosomal protein L22 | polymer | 128 | 14785.0 | 1 | UniProt (Q6PDV8) Pfam (PF01776) In PDB | Rattus norvegicus (Norway rat) | RCG31311,Ribosomal protein L22,Ribosomal protein L22-like |
| 57 | W | 60S ribosomal protein L23 | polymer | 140 | 14892.5 | 1 | UniProt (A0A3P9HH38) Pfam (PF00238) In PDB | Rattus norvegicus (Norway rat) | |
| 58 | X | 60S ribosomal protein L24 | polymer | 157 | 17825.1 | 1 | UniProt (F2X267) Pfam (PF01246) In PDB | Rattus norvegicus (Norway rat) | Ribosomal protein L24 |
| 59 | Y | 60S ribosomal protein L23a | polymer | 156 | 17740.2 | 1 | UniProt (P62752) Pfam (PF03939) Pfam (PF00276) In PDB | Rattus norvegicus (Norway rat) | |
| 60 | Z | 60S ribosomal protein L26 | polymer | 145 | 17322.4 | 1 | UniProt (P12749) Pfam (PF16906) Pfam (PF00467) In PDB | Rattus norvegicus (Norway rat) | |
| 61 | a | 60S ribosomal protein L27 | polymer | 136 | 15835.8 | 1 | UniProt (A0A851LWS6) Pfam (PF00467) Pfam (PF01777) In PDB | Rattus norvegicus (Norway rat) | |
| 62 | b | 60S ribosomal protein L27a | polymer | 148 | 16661.6 | 1 | UniProt (P18445) Pfam (PF00828) In PDB | Rattus norvegicus (Norway rat) | |
| 63 | c | 60S ribosomal protein L29 | polymer | 156 | 17374.8 | 1 | UniProt (P25886) Pfam (PF01779) In PDB | Rattus norvegicus (Norway rat) | P23 |
| 64 | d | 60S ribosomal protein L30 | polymer | 115 | 12805.1 | 1 | UniProt (P62890) Pfam (PF01248) In PDB | Rattus norvegicus (Norway rat) | |
| 65 | e | 60S ribosomal protein L31 | polymer | 125 | 14494.9 | 1 | UniProt (G7NZE1) Pfam (PF01198) In PDB | Rattus norvegicus (Norway rat) | |
| 66 | f | 60S ribosomal protein L32 | polymer | 135 | 15898.9 | 1 | UniProt (P62912) Pfam (PF01655) In PDB | Rattus norvegicus (Norway rat) | |
| 67 | g | 60S ribosomal protein L35a | polymer | 110 | 12580.8 | 1 | UniProt (P04646) Pfam (PF01247) In PDB | Rattus norvegicus (Norway rat) | |
| 68 | h | 60S ribosomal protein L34 | polymer | 117 | 13326.1 | 1 | UniProt (B2RZD4) UniProt (by SIFTS) (A6HVR9) In PDB | Rattus norvegicus (Norway rat) | |
| 69 | i | 60S ribosomal protein L35 | polymer | 123 | 14595.7 | 1 | UniProt (P17078) Pfam (PF00831) In PDB | Rattus norvegicus (Norway rat) | |
| 70 | j | 60S ribosomal protein L36 | polymer | 105 | 12290.9 | 1 | UniProt (Q9Y3U8) Pfam (PF01158) In PDB | Rattus norvegicus (Norway rat) | Large ribosomal subunit protein eL36 |
| 71 | k | Ribosomal protein L37 | polymer | 97 | 11111.0 | 1 | UniProt (A0A2Y9RW09) Pfam (PF01907) In PDB | Rattus norvegicus (Norway rat) | |
| 72 | l | 60S ribosomal protein L38 | polymer | 70 | 8238.9 | 1 | UniProt (A0A1A7W9T9) Pfam (PF01781) In PDB | Rattus norvegicus (Norway rat) | |
| 73 | m | 60S ribosomal protein L39 | polymer | 51 | 6426.8 | 1 | UniProt (A0A7N4PFJ2) Pfam (PF00832) In PDB | Rattus norvegicus (Norway rat) | |
| 74 | n | Ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14758.4 | 1 | UniProt (Q6P7R7) Pfam (PF00240) Pfam (PF01020) In PDB | Rattus norvegicus (Norway rat) | Ubiquitin A-52 residue ribosomal protein fusion product 1 |
| 75 | o | 60S ribosomal protein L41 | polymer | 25 | 3473.5 | 1 | UniProt (P62948) Pfam (PF05162) In PDB | Rattus norvegicus (Norway rat) | |
| 76 | p | Ribosomal protein L36a | polymer | 106 | 12477.0 | 1 | UniProt (A0A7J7V6K8) Pfam (PF00935) In PDB | Rattus norvegicus (Norway rat) | |
| 77 | q | 60S ribosomal protein L37a | polymer | 92 | 10299.3 | 1 | UniProt (A0A6J2LF66) Pfam (PF01780) In PDB | Rattus norvegicus (Norway rat) | Ribosomal protein L37a |
| 78 | r | 60S ribosomal protein L28 | polymer | 137 | 15770.6 | 1 | UniProt (F7EPV5) Pfam (PF01778) In PDB | Rattus norvegicus (Norway rat) | |
| 79 | t | RNA (4803-MER) | polymer | 4803 | 1553954.3 | 1 | Rattus norvegicus (Norway rat) | ||
| 80 | u | RNA (76-MER) | polymer | 76 | 24414.5 | 1 | GenBank (1851728667) | Rattus norvegicus (Norway rat) | |
| 81 | v | RNA (76-MER) | polymer | 76 | 24436.5 | 1 | GenBank (1879656365) | Rattus norvegicus (Norway rat) | |
| 82 | w | RNA (5'-D(P*()P*()P*()P*())-R(P*UP*UP*AP*CP*GP*GP*CP*GP*GP*UP*()P*()P*()P*()P*()P*())-3') | polymer | 20 | 6360.8 | 1 | Rattus norvegicus (Norway rat) | ||
| 83 | Cz | 60S ribosomal protein L10a | polymer | 217 | 24879.4 | 1 | UniProt (P62907) Pfam (PF00687) In PDB | Rattus norvegicus (Norway rat) | |
| 84 | y | ALA-ALA-LYS-ALA | polymer | 4 | 360.4 | 1 | Rattus norvegicus (Norway rat) | ||
| 85 | E, Z, S2, t, B... | MAGNESIUM ION | non-polymer | 24.3 | 33 | Chemie (MG) | |||
| 86 | k, p, q, S2, Sa... | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 87 | water | water | 18.0 | 8 | Chemie (HOH) |
Sequence modifications
q: 1 - 92 (UniProt: A0A6J2LF66)
u: 1 - 76 (GenBank: 1851728667)
v: 1 - 76 (GenBank: 1879656365)
| PDB | External Database | Details |
|---|---|---|
| Glu 87 | Lys 87 | conflict |
| PDB | External Database | Details |
|---|---|---|
| C 34 | G 945454 | conflict |
| C 35 | A 945453 | conflict |
| G 36 | A 945452 | conflict |
| U 37 | A 945451 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | A 4665118 | deletion |
| C 12 | U 4665123 | conflict |
| C 14 | A 4665125 | conflict |
| A 16 | U 4665127 | conflict |
| C 34 | G 4665145 | conflict |
| C 35 | A 4665146 | conflict |
| G 36 | A 4665147 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 84 |
| Total formula weight | 3776942.2 | |
| Non-Polymers* | Number of molecules | 39 |
| Total formula weight | 1194.5 | |
| All* | Total formula weight | 3778136.7 |
