7PNQ
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | X, H, D | 43E6 antibody heavy chain | polymer | 124 | 13511.9 | 3 | Homo sapiens | ||
| 2 | Y, L, F | 43E6 antibody light chain | polymer | 107 | 11421.7 | 3 | Homo sapiens | ||
| 3 | C, A, B | Spike glycoprotein | polymer | 1322 | 146438.3 | 3 | UniProt (Q696P8) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) UniProt (by SIFTS) (P36334) In PDB | Human coronavirus OC43 (HCoV-OC43) | S glycoprotein,E2,Peplomer protein |
| 4 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 15 | Chemie (NAG) |
Sequence modifications
C, A, B: 14 - 1264 (UniProt: Q696P8)
| PDB | External Database | Details |
|---|---|---|
| Met -9 | - | initiating methionine |
| Pro -8 | - | expression tag |
| Met -7 | - | expression tag |
| Gly -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Leu -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Leu -1 | - | expression tag |
| Ala 0 | - | expression tag |
| Thr 1 | - | expression tag |
| Leu 2 | - | expression tag |
| Tyr 3 | - | expression tag |
| Leu 4 | - | expression tag |
| Leu 5 | - | expression tag |
| Gly 6 | - | expression tag |
| Met 7 | - | expression tag |
| Leu 8 | - | expression tag |
| Val 9 | - | expression tag |
| Ala 10 | - | expression tag |
| Ser 11 | - | expression tag |
| Val 12 | - | expression tag |
| Leu 13 | - | expression tag |
| Gly 756 | Arg 754 | conflict |
| Gly 757 | Arg 755 | conflict |
| Gly 759 | Arg 757 | conflict |
| Leu 1265 | - | expression tag |
| Leu 1266 | - | expression tag |
| Ile 1267 | - | expression tag |
| Lys 1268 | - | expression tag |
| Arg 1269 | - | expression tag |
| Met 1270 | - | expression tag |
| Lys 1271 | - | expression tag |
| Gln 1272 | - | expression tag |
| Ile 1273 | - | expression tag |
| Glu 1274 | - | expression tag |
| Asp 1275 | - | expression tag |
| Lys 1276 | - | expression tag |
| Ile 1277 | - | expression tag |
| Glu 1278 | - | expression tag |
| Glu 1279 | - | expression tag |
| Ile 1280 | - | expression tag |
| Glu 1281 | - | expression tag |
| Ser 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
| Gln 1284 | - | expression tag |
| Lys 1285 | - | expression tag |
| Lys 1286 | - | expression tag |
| Ile 1287 | - | expression tag |
| Glu 1288 | - | expression tag |
| Asn 1289 | - | expression tag |
| Glu 1290 | - | expression tag |
| Ile 1291 | - | expression tag |
| Ala 1292 | - | expression tag |
| Arg 1293 | - | expression tag |
| Ile 1294 | - | expression tag |
| Lys 1295 | - | expression tag |
| Lys 1296 | - | expression tag |
| Ile 1297 | - | expression tag |
| Lys 1298 | - | expression tag |
| Leu 1299 | - | expression tag |
| Val 1300 | - | expression tag |
| Pro 1301 | - | expression tag |
| Arg 1302 | - | expression tag |
| Gly 1303 | - | expression tag |
| Ser 1304 | - | expression tag |
| Leu 1305 | - | expression tag |
| Glu 1306 | - | expression tag |
| Trp 1307 | - | expression tag |
| Ser 1308 | - | expression tag |
| His 1309 | - | expression tag |
| Pro 1310 | - | expression tag |
| Gln 1311 | - | expression tag |
| Phe 1312 | - | expression tag |
| Glu 1313 | - | expression tag |
| Lys 1314 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 514115.6 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 3318.1 | |
| All* | Total formula weight | 517433.8 |
