7OLD
Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 1 | 26S rRNA | polymer | 3337 | 1078716.1 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 2 | 2 | 18S rRNA | polymer | 1796 | 578887.6 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 3 | 3 | 5S rRNA | polymer | 120 | 38596.9 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 4 | 4 | 5.8S rRNA | polymer | 156 | 50147.7 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 5 | 5 | pe/E tRNA | polymer | 75 | 24004.3 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 6 | A | Putative guanine nucleotide-binding protein | polymer | 316 | 35149.6 | 1 | UniProt (G0S9U0) Pfam (PF00400) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 7 | B | HABP4_PAI-RBP1 domain-containing protein | polymer | 302 | 32667.9 | 1 | UniProt (G0S428) Pfam (PF09598) Pfam (PF04774) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 8 | C | Elongation factor 2 | polymer | 845 | 93786.5 | 1 | UniProt (G0S5T7) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) Pfam (PF00009) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 9 | LA | 60S ribosomal protein L2-like protein | polymer | 254 | 27598.9 | 1 | UniProt (G0S4P8) Pfam (PF00181) Pfam (PF03947) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 10 | LB | 60S ribosomal protein L3-like protein | polymer | 392 | 44456.9 | 1 | UniProt (G0RXW1) Pfam (PF00297) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 11 | LC | 60S ribosomal protein L4-like protein | polymer | 365 | 39439.9 | 1 | UniProt (G0SFC3) Pfam (PF00573) Pfam (PF14374) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 12 | LD | 60S ribosomal protein l5-like protein | polymer | 304 | 35034.6 | 1 | UniProt (G0SEG2) Pfam (PF17144) Pfam (PF14204) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 13 | LE | 60S ribosomal protein L6 | polymer | 200 | 22133.0 | 1 | UniProt (G0S0D6) Pfam (PF01159) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 14 | LF | 60S ribosomal protein l7-like protein | polymer | 249 | 28821.8 | 1 | UniProt (G0SFL0) Pfam (PF08079) Pfam (PF00327) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 15 | LG | 60S ribosomal protein L8 | polymer | 262 | 29744.5 | 1 | UniProt (G0SAJ9) Pfam (PF01248) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 16 | LH | 60S ribosomal protein l9-like protein | polymer | 229 | 25882.0 | 1 | UniProt (G0S0E5) Pfam (PF00347) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 17 | LI | 60S ribosomal protein L10-like protein | polymer | 219 | 25255.4 | 1 | UniProt (G0SEI1) Pfam (PF00252) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 18 | LJ | Putative ribosomal protein | polymer | 173 | 20119.3 | 1 | UniProt (G0SHQ2) Pfam (PF00281) Pfam (PF00673) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 19 | LK | 60S ribosomal protein L12-like protein | polymer | 165 | 17802.7 | 1 | UniProt (G0SGH8) Pfam (PF03946) Pfam (PF00298) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 20 | LL | 60S ribosomal protein L13 | polymer | 213 | 24191.2 | 1 | UniProt (G0S992) Pfam (PF01294) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 21 | LM | 60S ribosomal protein L14-like protein | polymer | 142 | 16111.9 | 1 | UniProt (G0S1R0) Pfam (PF01929) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 22 | LN | Ribosomal protein L15 | polymer | 203 | 24307.3 | 1 | UniProt (G0RZ88) Pfam (PF00827) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 23 | LO | 60S ribosomal protein L16-like protein | polymer | 204 | 22993.2 | 1 | UniProt (G0SH61) Pfam (PF00572) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 24 | LP | 60S ribosomal protein l17-like protein | polymer | 187 | 21072.2 | 1 | UniProt (G0SGY1) Pfam (PF00237) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 25 | LQ | Ribosomal protein L18-like protein | polymer | 213 | 24195.5 | 1 | UniProt (G0S9B5) Pfam (PF17135) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 26 | LR | Ribosomal protein L19 | polymer | 192 | 22409.2 | 1 | UniProt (G0S9T3) Pfam (PF01280) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 27 | LS | 60S ribosomal protein L20 | polymer | 174 | 20341.9 | 1 | UniProt (G0SCE2) Pfam (PF01775) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 28 | LT | 60S ribosomal protein l21-like protein | polymer | 160 | 18159.2 | 1 | UniProt (G0S0Z3) Pfam (PF01157) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 29 | LU | 60S ribosomal protein L22-like protein | polymer | 127 | 14302.6 | 1 | UniProt (G0SDS8) Pfam (PF01776) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 30 | LV | 60S ribosomal protein l23-like protein | polymer | 139 | 14674.4 | 1 | UniProt (G0SI44) Pfam (PF00238) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 31 | LW | 60S ribosomal protein L24-like protein | polymer | 205 | 23087.8 | 1 | UniProt (G0S1P9) Pfam (PF01246) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 32 | LX | 60S ribosomal protein L25-like protein | polymer | 156 | 17175.3 | 1 | UniProt (G0S507) Pfam (PF03939) Pfam (PF00276) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 33 | LY | 60S ribosomal protein L26-like protein | polymer | 138 | 15565.3 | 1 | UniProt (G0RYN9) Pfam (PF16906) Pfam (PF00467) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 34 | LZ | 60S ribosomal protein L27 | polymer | 135 | 15803.7 | 1 | UniProt (G0RZE9) Pfam (PF01777) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 35 | La | 60S ribosomal protein L28-like protein | polymer | 149 | 16848.5 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 36 | Lb | 60S ribosomal protein L29 | polymer | 65 | 7529.7 | 1 | UniProt (Q2H9W4) Pfam (PF01779) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eL29 |
| 37 | Lc | 60S ribosomal protein l30-like protein | polymer | 108 | 11602.6 | 1 | UniProt (G0SEI0) Pfam (PF01248) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 38 | Ld | Putative 60S ribosomal protein | polymer | 120 | 13872.2 | 1 | UniProt (G0SD68) Pfam (PF01198) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 39 | Le | 60S ribosomal protein L32-like protein | polymer | 131 | 15096.0 | 1 | UniProt (G0S6V4) Pfam (PF01655) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 40 | Lf | 60S ribosomal protein l33-like protein | polymer | 109 | 12330.3 | 1 | UniProt (G0SCL3) Pfam (PF01247) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 41 | Lg | Ribosomal protein l34-like protein | polymer | 119 | 13493.0 | 1 | UniProt (G0SFN0) Pfam (PF01199) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 42 | Lh | Dolichyl-diphosphooligosaccharide--protein glycotransferase | polymer | 126 | 14643.4 | 1 | UniProt (G0S0D7) Pfam (PF00831) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 43 | Li | 60S ribosomal protein L36 | polymer | 110 | 12784.1 | 1 | UniProt (G0SBN1) Pfam (PF01158) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 44 | Lj | Ribosomal protein L37 | polymer | 95 | 10660.5 | 1 | UniProt (G0S101) Pfam (PF01907) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 45 | Lk | 60S ribosomal protein L38-like protein | polymer | 94 | 10902.0 | 1 | UniProt (G0SG89) Pfam (PF01781) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 46 | Ll | Ribosomal protein eL39 | polymer | 51 | 6297.5 | 1 | UniProt (Q2H9R2) Pfam (PF00832) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 47 | Lm | Ubiquitin | polymer | 127 | 14481.1 | 1 | UniProt (G0S8G4) Pfam (PF00240) Pfam (PF01020) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eL40 |
| 48 | Ln, Lr | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 2 | UniProt (P0CX86) Pfam (PF05162) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eL41 |
| 49 | Lo | 60S ribosomal protein L44-like protein | polymer | 106 | 12045.5 | 1 | UniProt (G0SBZ6) Pfam (PF00935) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 50 | Lp | 60S ribosomal protein L43-like protein | polymer | 92 | 10159.0 | 1 | UniProt (G0S6B0) Pfam (PF01780) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 51 | Lq | Putative 60S ribosomal protein | polymer | 147 | 15960.5 | 1 | UniProt (G0SHJ6) Pfam (PF01778) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 52 | Ls | 60S acidic ribosomal protein P0 | polymer | 312 | 33853.6 | 1 | UniProt (G0SGP3) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 53 | SA | 40S ribosomal protein S0 | polymer | 285 | 31159.0 | 1 | UniProt (G0RYF9) Pfam (PF00318) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 54 | SB | 40S ribosomal protein S1 | polymer | 255 | 29245.2 | 1 | UniProt (G0S7T8) Pfam (PF01015) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 55 | SC | 40S ribosomal protein S2-like protein | polymer | 263 | 28556.1 | 1 | UniProt (G0SAV4) Pfam (PF00333) Pfam (PF03719) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 56 | SD | 40S ribosomal protein S3-like protein | polymer | 254 | 27893.0 | 1 | UniProt (G0S6I7) Pfam (PF07650) Pfam (PF00189) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 57 | SE | 40S ribosomal protein S4 | polymer | 264 | 29800.8 | 1 | UniProt (G0S1A6) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 58 | SF | 40S ribosomal protein s5-like protein | polymer | 212 | 23679.2 | 1 | UniProt (G0S1Z0) Pfam (PF00177) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 59 | SG | 40S ribosomal protein S6 | polymer | 239 | 27490.1 | 1 | UniProt (G0RY43) Pfam (PF01092) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 60 | SH | 40S ribosomal protein S7 | polymer | 203 | 23084.7 | 1 | UniProt (G0S8C4) Pfam (PF01251) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 61 | SI | 40S ribosomal protein S8 | polymer | 202 | 23102.4 | 1 | UniProt (G0RY45) Pfam (PF01201) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 62 | SJ | 40S ribosomal protein s9-like protein | polymer | 190 | 22029.8 | 1 | UniProt (G0S0Z4) Pfam (PF00163) Pfam (PF01479) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 63 | SK | 40S ribosomal protein s10-like protein | polymer | 159 | 18121.5 | 1 | UniProt (G0RZD8) Pfam (PF03501) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 64 | SL | 40S ribosomal protein S11-like protein | polymer | 161 | 18698.2 | 1 | UniProt (G0SF00) Pfam (PF16205) Pfam (PF00366) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 65 | SM | 40S ribosomal protein S12 | polymer | 144 | 15961.3 | 1 | UniProt (G0SHH9) Pfam (PF01248) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 66 | SN | 40S ribosomal protein S13-like protein | polymer | 151 | 16912.9 | 1 | UniProt (G0RZM9) Pfam (PF08069) Pfam (PF00312) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 67 | SO | 40S ribosomal protein S14-like protein | polymer | 150 | 16071.5 | 1 | UniProt (G0SFL1) Pfam (PF00411) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 68 | SP | 40S ribosomal protein s15-like protein | polymer | 153 | 17601.6 | 1 | UniProt (G0S084) Pfam (PF00203) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 69 | SQ | 40S ribosomal protein S16-like protein | polymer | 143 | 15962.8 | 1 | UniProt (G0SBR7) Pfam (PF00380) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 70 | SR | 40S ribosomal protein S17-like protein | polymer | 143 | 16720.2 | 1 | UniProt (G0S871) Pfam (PF00833) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 71 | SS | Putative ribosomal protein | polymer | 156 | 17826.7 | 1 | UniProt (G0S6J7) Pfam (PF00416) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 72 | ST | 40S ribosomal protein S19-like protein | polymer | 153 | 17151.3 | 1 | UniProt (G0SFK8) Pfam (PF01090) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 73 | SU | 40S ribosomal protein S20-like protein | polymer | 116 | 13212.6 | 1 | UniProt (G0S379) Pfam (PF00338) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 74 | SV | 40S ribosomal protein S21-like protein | polymer | 98 | 10961.5 | 1 | UniProt (G0SI21) Pfam (PF01249) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 75 | SW | 40S ribosomal protein S22-like protein | polymer | 130 | 14905.5 | 1 | UniProt (G0SHI0) Pfam (PF00410) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 76 | SX | 40S ribosomal protein s23-like protein | polymer | 145 | 15934.7 | 1 | UniProt (G0RY17) Pfam (PF00164) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 77 | SY | 40S ribosomal protein S24 | polymer | 136 | 15535.3 | 1 | UniProt (P0CU28) Pfam (PF01282) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 78 | SZ | 40S ribosomal protein S25 | polymer | 99 | 10932.9 | 1 | UniProt (G0S1Y9) Pfam (PF03297) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 79 | Sa | 40S ribosomal protein S26 | polymer | 119 | 13616.2 | 1 | UniProt (G0S2X4) Pfam (PF01283) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 80 | Sb | Ribosomal protein s27-like protein | polymer | 82 | 8923.6 | 1 | UniProt (G0S1S4) Pfam (PF01667) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 81 | Sc | 40S ribosomal protein S28-like protein | polymer | 68 | 7742.0 | 1 | UniProt (G0S9M9) Pfam (PF01200) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 82 | Sd | Ribosomal protein uS14 | polymer | 56 | 6504.6 | 1 | UniProt (Q2HB68) Pfam (PF00253) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 83 | Se | 40S ribosomal protein S30 | polymer | 62 | 6910.3 | 1 | UniProt (Q2H4C5) Pfam (PF04758) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eS30 |
| 84 | Sf | 40S ribosomal protein S27a-like protein | polymer | 154 | 17731.8 | 1 | UniProt (G0S2X5) Pfam (PF00240) Pfam (PF01599) In PDB | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eS31 |
| 85 | 1, C | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
| 86 | C | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 87 | Lg, Lj, Lm, Lo, Lp... | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) |
Sequence modifications
Lm: 3 - 128 (UniProt: G0S8G4)
| PDB | External Database | Details |
|---|---|---|
| Met 2 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 85 |
| Total formula weight | 3361883.1 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 1039.4 | |
| All* | Total formula weight | 3362922.5 |
