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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7ODT

State C of the human mitoribosomal large subunit assembly intermediate

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1tMitochondrial ribosome-associated GTPase 2polymer40644018.41UniProt (Q9H4K7)
Pfam (PF01018)
Pfam (PF01926)
In PDB		Homo sapiens (Human)GTP-binding protein 5,Protein obg homolog 1,ObgH1
2uMitochondrial assembly of ribosomal large subunit protein 1polymer23426203.11UniProt (Q96EH3)
Pfam (PF02410)
In PDB		Homo sapiens (Human)
3vMIEF1 upstream open reading frame proteinpolymer708460.81UniProt (L0R8F8)
Pfam (PF05347)
In PDB		Homo sapiens (Human)
4wAcyl carrier protein, mitochondrialpolymer15617434.31UniProt (O14561)
Pfam (PF00550)
In PDB		Homo sapiens (Human)ACP,CI-SDAP,NADH-ubiquinone oxidoreductase 9.6 kDa subunit
5x5-methylcytosine rRNA methyltransferase NSUN4polymer38443140.51UniProt (Q96CB9)
Pfam (PF01189)
In PDB		Homo sapiens (Human)NOL1/NOP2/Sun domain family member 4
6yTranscription termination factor 4, mitochondrialpolymer38144012.51UniProt (Q7Z6M4)
Pfam (PF02536)
In PDB		Homo sapiens (Human)Mitochondrial transcription termination factor 4,mTERF domain-containing protein 2
7039S ribosomal protein L32, mitochondrialpolymer18821437.81UniProt (Q9BYC8)
Pfam (PF01783)
In PDB		Homo sapiens (Human)MRP-L32,Mitochondrial large ribosomal subunit protein bL32m
8139S ribosomal protein L33, mitochondrialpolymer657635.21UniProt (O75394)
Pfam (PF00471)
In PDB		Homo sapiens (Human)MRP-L33,Mitochondrial large ribosomal subunit protein bL33m
9239S ribosomal protein L34, mitochondrialpolymer9210183.91UniProt (Q9BQ48)
Pfam (PF00468)
In PDB		Homo sapiens (Human)MRP-L34,Mitochondrial large ribosomal subunit protein bL34m
10339S ribosomal protein L35, mitochondrialpolymer18821558.51UniProt (Q9NZE8)
Pfam (PF01632)
In PDB		Homo sapiens (Human)MRP-L35,Mitochondrial large ribosomal subunit protein bL35m
11439S ribosomal protein L36, mitochondrialpolymer10311809.31UniProt (Q9P0J6)
Pfam (PF00444)
In PDB		Homo sapiens (Human)MRP-L36,BRCA1-interacting protein 1,Mitochondrial large ribosomal subunit protein bL36m
12539S ribosomal protein L37, mitochondrialpolymer42348183.31UniProt (Q9BZE1)
Pfam (PF07147)
In PDB		Homo sapiens (Human)MRP-L37,39S ribosomal protein L2,mitochondrial,MRP-L2,Mitochondrial large ribosomal subunit protein mL37
13639S ribosomal protein L38, mitochondrialpolymer38044659.41UniProt (Q96DV4)
Pfam (PF01161)
In PDB		Homo sapiens (Human)MRP-L38,Mitochondrial large ribosomal subunit protein mL38
14739S ribosomal protein L39, mitochondrialpolymer33838764.81UniProt (Q9NYK5)
In PDB		Homo sapiens (Human)MRP-L39,39S ribosomal protein L5,mitochondrial,MRP-L5,Mitochondrial large ribosomal subunit protein mL39
15839S ribosomal protein L40, mitochondrialpolymer20624534.41UniProt (Q9NQ50)
Pfam (PF09812)
In PDB		Homo sapiens (Human)MRP-L40,Mitochondrial large ribosomal subunit protein mL40,Nuclear localization signal-containing protein deleted in velocardiofacial syndrome,Up-regulated in metastasis
16939S ribosomal protein L41, mitochondrialpolymer13715404.71UniProt (Q8IXM3)
Pfam (PF09809)
In PDB		Homo sapiens (Human)MRP-L41,39S ribosomal protein L27 homolog,Bcl-2-interacting mitochondrial ribosomal protein L41,Cell proliferation-inducing gene 3 protein,MRP-L27 homolog,Mitochondrial large ribosomal subunit protein mL41
17A16S mitochondrial rRNApolymer1559500047.71Homo sapiens (human)
18Bmitochondrial tRNAValpolymer7222961.71Homo sapiens (human)
19D39S ribosomal protein L2, mitochondrialpolymer30533355.91UniProt (Q5T653)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Homo sapiens (Human)MRP-L2,Mitochondrial large ribosomal subunit protein uL2m
20E39S ribosomal protein L3, mitochondrialpolymer34838689.61UniProt (P09001)
Pfam (PF00297)
In PDB		Homo sapiens (Human)MRP-L3,Mitochondrial large ribosomal subunit protein uL3m
21F39S ribosomal protein L4, mitochondrialpolymer31134970.21UniProt (Q9BYD3)
Pfam (PF00573)
In PDB		Homo sapiens (Human)MRP-L4,Mitochondrial large ribosomal subunit protein uL4m
22H39S ribosomal protein L9, mitochondrialpolymer26730296.41UniProt (Q9BYD2)
Pfam (PF01281)
In PDB		Homo sapiens (Human)MRP-L9,Mitochondrial large ribosomal subunit protein bL9m
23I39S ribosomal protein L10, mitochondrialpolymer26129322.51UniProt (Q7Z7H8)
Pfam (PF00466)
In PDB		Homo sapiens (Human)MRP-L10,39S ribosomal protein L8,mitochondrial,MRP-L8,Mitochondrial large ribosomal subunit protein uL10m
24J39S ribosomal protein L11, mitochondrialpolymer19220716.21UniProt (Q9Y3B7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Homo sapiens (Human)MRP-L11,Mitochondrial large ribosomal subunit protein uL11m
25K39S ribosomal protein L13, mitochondrialpolymer17820765.01UniProt (Q9BYD1)
Pfam (PF00572)
In PDB		Homo sapiens (Human)L13mt,MRP-L13,Mitochondrial large ribosomal subunit protein uL13m
26L39S ribosomal protein L14, mitochondrialpolymer14515973.71UniProt (Q6P1L8)
Pfam (PF00238)
In PDB		Homo sapiens (Human)MRP-L14,39S ribosomal protein L32,mitochondrial,MRP-L32,Mitochondrial large ribosomal subunit protein uL14m
27M39S ribosomal protein L15, mitochondrialpolymer29633473.81UniProt (Q9P015)
Pfam (PF00828)
In PDB		Homo sapiens (Human)MRP-L15,Mitochondrial large ribosomal subunit protein uL15m
28N39S ribosomal protein L16, mitochondrialpolymer25128496.31UniProt (Q9NX20)
Pfam (PF00252)
In PDB		Homo sapiens (Human)MRP-L16,Mitochondrial large ribosomal subunit protein uL16m
29O39S ribosomal protein L17, mitochondrialpolymer17520083.31UniProt (Q9NRX2)
Pfam (PF01196)
In PDB		Homo sapiens (Human)MRP-L17,LYST-interacting protein 2,Mitochondrial large ribosomal subunit protein bL17m
30P39S ribosomal protein L18, mitochondrialpolymer18020607.61UniProt (Q9H0U6)
Pfam (PF00861)
In PDB		Homo sapiens (Human)MRP-L18,Mitochondrial large ribosomal subunit protein uL18m
31Q39S ribosomal protein L19, mitochondrialpolymer29233585.01UniProt (P49406)
Pfam (PF01245)
In PDB		Homo sapiens (Human)MRP-L19,39S ribosomal protein L15,mitochondrial,MRP-L15,Mitochondrial large ribosomal subunit protein bL19m
32R39S ribosomal protein L20, mitochondrialpolymer14917479.71UniProt (Q9BYC9)
Pfam (PF00453)
In PDB		Homo sapiens (Human)MRP-L20,Mitochondrial large ribosomal subunit protein bL20m
33S39S ribosomal protein L21, mitochondrialpolymer20522847.71UniProt (Q7Z2W9)
Pfam (PF00829)
In PDB		Homo sapiens (Human)MRP-L21,Mitochondrial large ribosomal subunit protein bL21m
34T39S ribosomal protein L22, mitochondrialpolymer20623683.71UniProt (Q9NWU5)
Pfam (PF00237)
In PDB		Homo sapiens (Human)MRP-L22,39S ribosomal protein L25,mitochondrial,MRP-L25,Mitochondrial large ribosomal subunit protein uL22m
35U39S ribosomal protein L23, mitochondrialpolymer15317849.21UniProt (Q16540)
Pfam (PF00276)
In PDB		Homo sapiens (Human)L23mt,MRP-L23,L23 mitochondrial-related protein,Mitochondrial large ribosomal subunit protein uL23m,Ribosomal protein L23-like
36V39S ribosomal protein L24, mitochondrialpolymer21624953.91UniProt (Q96A35)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Homo sapiens (Human)MRP-L24,Mitochondrial large ribosomal subunit protein uL24m
37W39S ribosomal protein L27, mitochondrialpolymer14816102.91UniProt (Q9P0M9)
Pfam (PF01016)
In PDB		Homo sapiens (Human)MRP-L27,Mitochondrial large ribosomal subunit protein bL27m
38X39S ribosomal protein L28, mitochondrialpolymer25630202.91UniProt (Q13084)
Pfam (PF00830)
In PDB		Homo sapiens (Human)MRP-L28,Melanoma antigen p15,Melanoma-associated antigen recognized by T-lymphocytes,Mitochondrial large ribosomal subunit protein bL28m
39Y39S ribosomal protein L47, mitochondrialpolymer25029508.51UniProt (Q9HD33)
Pfam (PF06984)
In PDB		Homo sapiens (Human)MRP-L47,Mitochondrial large ribosomal subunit protein uL29m,Nasopharyngeal carcinoma metastasis-related protein 1
40Z39S ribosomal protein L30, mitochondrialpolymer16118582.81UniProt (Q8TCC3)
Pfam (PF00327)
In PDB		Homo sapiens (Human)MRP-L30,39S ribosomal protein L28,mitochondrial,MRP-L28,Mitochondrial large ribosomal subunit protein uL30m
41a39S ribosomal protein L42, mitochondrialpolymer14216691.21UniProt (Q9Y6G3)
Pfam (PF10210)
In PDB		Homo sapiens (Human)MRP-L42,39S ribosomal protein L31,mitochondrial,MRP-L31,Mitochondrial large ribosomal subunit protein mL42
42b39S ribosomal protein L43, mitochondrialpolymer21523499.81UniProt (Q8N983)
Pfam (PF05047)
In PDB		Homo sapiens (Human)L43mt,MRP-L43,Mitochondrial large ribosomal subunit protein mL43,Mitochondrial ribosomal protein bMRP36a
43c39S ribosomal protein L44, mitochondrialpolymer33237583.31UniProt (Q9H9J2)
In PDB		Homo sapiens (Human)MRP-L44,Mitochondrial large ribosomal subunit protein mL44
44d39S ribosomal protein L45, mitochondrialpolymer30635402.91UniProt (Q9BRJ2)
Pfam (PF04280)
In PDB		Homo sapiens (Human)MRP-L45,Mitochondrial large ribosomal subunit protein mL45
45e39S ribosomal protein L46, mitochondrialpolymer27931748.11UniProt (Q9H2W6)
Pfam (PF11788)
In PDB		Homo sapiens (Human)MRP-L46,Mitochondrial large ribosomal subunit protein mL46,P2ECSL
46f39S ribosomal protein L48, mitochondrialpolymer21223970.81UniProt (Q96GC5)
Pfam (PF00338)
In PDB		Homo sapiens (Human)MRP-L48,Mitochondrial large ribosomal subunit protein mL48
47g39S ribosomal protein L49, mitochondrialpolymer16619225.01UniProt (Q13405)
Pfam (PF05046)
In PDB		Homo sapiens (Human)MRP-L49,Mitochondrial large ribosomal subunit protein mL49,Neighbor of FAU,NOF,Protein NOF1
48h39S ribosomal protein L50, mitochondrialpolymer15818349.91UniProt (Q8N5N7)
Pfam (PF10501)
In PDB		Homo sapiens (Human)MRP-L50,Mitochondrial large ribosomal subunit protein mL50
49i39S ribosomal protein L51, mitochondrialpolymer12815125.91UniProt (Q4U2R6)
Pfam (PF10244)
In PDB		Homo sapiens (Human)MRP-L51,Mitochondrial large ribosomal subunit protein mL51,bMRP-64,bMRP64
50j39S ribosomal protein L52, mitochondrialpolymer12313682.71UniProt (Q86TS9)
Pfam (PF18699)
In PDB		Homo sapiens (Human)MRP-L52,Mitochondrial large ribosomal subunit protein mL52
51k39S ribosomal protein L53, mitochondrialpolymer11212167.91UniProt (Q96EL3)
Pfam (PF10780)
In PDB		Homo sapiens (Human)L53mt,MRP-L53,Mitochondrial large ribosomal subunit protein mL53
52l39S ribosomal protein L54, mitochondrialpolymer13815844.21UniProt (Q6P161)
Pfam (PF08561)
In PDB		Homo sapiens (Human)MRP-L54,Mitochondrial large ribosomal subunit protein mL54
53m39S ribosomal protein L55, mitochondrialpolymer12815160.41UniProt (Q7Z7F7)
Pfam (PF09776)
In PDB		Homo sapiens (Human)MRP-L55,Mitochondrial large ribosomal subunit protein bL31m,Mitochondrial large ribosomal subunit protein mL55
54oRibosomal protein 63, mitochondrialpolymer10212292.31UniProt (Q9BQC6)
Pfam (PF14978)
In PDB		Homo sapiens (Human)hMRP63,Mitochondrial large ribosomal subunit protein mL63,Mitochondrial ribosomal protein 63,Mitochondrial ribosomal protein L57
55pPeptidyl-tRNA hydrolase ICT1, mitochondrialpolymer20623674.21UniProt (Q14197)
Pfam (PF00472)
In PDB		Homo sapiens (Human)39S ribosomal protein L58,mitochondrial,MRP-L58,Digestion substraction 1,DS-1,Immature colon carcinoma transcript 1 protein,Mitochondrial large ribosomal subunit protein mL62
56qGrowth arrest and DNA damage-inducible proteins-interacting protein 1polymer22225426.91UniProt (Q8TAE8)
Pfam (PF10147)
In PDB		Homo sapiens (Human)39S ribosomal protein L59,mitochondrial,MRP-L59,CKII beta-associating protein,CR6-interacting factor 1,CRIF1,Mitochondrial large ribosomal subunit protein mL64,Papillomavirus L2-interacting nuclear protein 1,PLINP-1,p53-responsive gene 6 protein
57r39S ribosomal protein S18a, mitochondrialpolymer19622224.11UniProt (Q9NVS2)
Pfam (PF01084)
In PDB		Homo sapiens (Human)S18mt-a,39S ribosomal protein S18-3,mitochondrial,MRP-S18-3,Mitochondrial large ribosomal subunit protein bS18a,Mitochondrial large ribosomal subunit protein mL66
58s39S ribosomal protein S30, mitochondrialpolymer43950429.61UniProt (Q9NP92)
Pfam (PF07147)
In PDB		Homo sapiens (Human)S30mt,Mitochondrial large ribosomal subunit protein mL65,Mitochondrial large ribosomal subunit protein mS30,Programmed cell death protein 9
59tGUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
60A, I, t, M, O...MAGNESIUM IONnon-polymer24.395Chemie (MG)
61wS-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATEnon-polymer496.61Chemie (PM8)
62xS-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
630, 4ZINC IONnon-polymer65.42Chemie (ZN)
64APOTASSIUM IONnon-polymer39.110Chemie (K)
65rFE2/S2 (INORGANIC) CLUSTERnon-polymer175.81Chemie (FES)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight1924496.2
Non-Polymers*Number of molecules111
Total formula weight4344.8
All*Total formula weight1928841.0
*Water molecules are not included.

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PDB entries from 2024-06-12

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