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7MPI

Stm1 bound vacant 80S structure isolated from cbf5-D95A

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1BA40S ribosomal protein S0-Apolymer20622811.11UniProt (P32905)
Pfam (PF00318)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
2BB40S ribosomal protein S1-Apolymer21424312.21UniProt (P33442)
Pfam (PF01015)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP10A,Small ribosomal subunit protein eS1-A
3BC40S ribosomal protein S2polymer21723213.01UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
4BD40S ribosomal protein S3polymer22324702.81UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP13,Small ribosomal subunit protein uS3,YS3
5BE40S ribosomal protein S4-Apolymer26029338.11UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
6BF40S ribosomal protein S5polymer20622908.31UniProt (P26783)
Pfam (PF00177)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
7BG40S ribosomal protein S6-Apolymer22625895.11UniProt (P0CX37)
Pfam (PF01092)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
8BH40S ribosomal protein S7-Apolymer18421000.51UniProt (P26786)
Pfam (PF01251)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
9BI40S ribosomal protein S8-Apolymer18821147.21UniProt (P0CX39)
Pfam (PF01201)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
10BJ40S ribosomal protein S9-Apolymer18521210.71UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
11BK40S ribosomal protein S10-Apolymer9611571.11UniProt (Q08745)
Pfam (PF03501)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS10-A
12BL40S ribosomal protein S11-Apolymer15517654.71UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
13BM40S ribosomal protein S12polymer12113028.01UniProt (P48589)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS12
14BN40S ribosomal protein S13polymer15016928.71UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Saccharomyces cerevisiae (Baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
15BO40S ribosomal protein S14-Apolymer12713446.41UniProt (P06367)
Pfam (PF00411)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP59A,Small ribosomal subunit protein uS11-A
16BP40S ribosomal protein S15polymer12414155.71UniProt (Q01855)
Pfam (PF00203)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
17BQ40S ribosomal protein S16-Apolymer14115659.21UniProt (P0CX51)
Pfam (PF00380)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
18BR40S ribosomal protein S17-Apolymer12113911.21UniProt (P02407)
Pfam (PF00833)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP51A,Small ribosomal subunit protein eS17-A
19BS40S ribosomal protein S18-Apolymer14516940.41UniProt (P0CX55)
Pfam (PF00416)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS13-A
20BT40S ribosomal protein S19-Apolymer14115566.71UniProt (P07280)
Pfam (PF01090)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
21BU40S ribosomal protein S20polymer10712190.21UniProt (P38701)
Pfam (PF00338)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS10
22BV40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
In PDB
Saccharomyces cerevisiae (Baker's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
23BW40S ribosomal protein S22-Apolymer12914518.91UniProt (P0C0W1)
Pfam (PF00410)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
24BX40S ribosomal protein S23-Apolymer14415942.71UniProt (P0CX29)
Pfam (PF00164)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
25BY40S ribosomal protein S24-Apolymer13415231.61UniProt (P0CX31)
Pfam (PF01282)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP50,Small ribosomal subunit protein eS24-A
26BZ40S ribosomal protein S25-Apolymer697930.31UniProt (Q3E792)
Pfam (PF03297)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
27Ba40S ribosomal protein S26-Bpolymer9711023.01UniProt (P39939)
Pfam (PF01283)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS26-B
28Bb40S ribosomal protein S27-Apolymer818762.21UniProt (P35997)
Pfam (PF01667)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
29Bc40S ribosomal protein S28-Apolymer637116.31UniProt (Q3E7X9)
Pfam (PF01200)
In PDB
Saccharomyces cerevisiae (Baker's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
30Bd40S ribosomal protein S29-Apolymer536335.31UniProt (P41057)
Pfam (PF00253)
In PDB
Saccharomyces cerevisiae (Baker's yeast)S36,Small ribosomal subunit protein uS14-A,YS29
31Be40S ribosomal protein S30-Apolymer606779.11UniProt (P0CX33)
Pfam (PF04758)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS30-A
32Bf40S ribosomal protein S31polymer576491.61UniProt (P05759)
Pfam (PF01599)
In PDB
Saccharomyces cerevisiae (Baker's yeast)CEP76,S37,Small ribosomal subunit protein eS31,YS24
33BgGuanine nucleotide-binding protein subunit beta-like proteinpolymer31234151.51UniProt (P38011)
Pfam (PF00400)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
34BhSuppressor protein STM1polymer899664.41UniProt (P39015)
In PDB
Saccharomyces cerevisiae (Baker's yeast)3BP1,GU4 nucleic-binding protein 2,G4p2 protein,POP2 multicopy suppressor protein 4,Ribosomal subunits association factor,AF,TOM1 suppressor protein 1,Triplex-binding protein 1
35B518S rRNApolymer1781574269.91Saccharomyces cerevisiae (Baker's yeast)
36A125S rRNApolymer31371014553.31Saccharomyces cerevisiae (Baker's yeast)
37A35s rRNApolymer12138951.11Saccharomyces cerevisiae (Baker's yeast)
38A45.8 S rRNApolymer15850682.91Saccharomyces cerevisiae (Baker's yeast)
39AA60S ribosomal protein L2-Apolymer24726643.71UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
40AB60S ribosomal protein L3polymer38643732.61UniProt (P14126)
Pfam (PF00297)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
41AC60S ribosomal protein L4-Apolymer36139027.91UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
42AD60S ribosomal protein L5polymer29233158.11UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
43AE60S ribosomal protein L6-Apolymer15617579.71UniProt (Q02326)
Pfam (PF01159)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
44AF60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF00327)
Pfam (PF08079)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
45AG60S ribosomal protein L8-Apolymer23025541.81UniProt (P17076)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
46AH60S ribosomal protein L9-Apolymer19021491.91UniProt (P05738)
Pfam (PF00347)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
47AI60S ribosomal protein L10polymer20523733.51UniProt (P41805)
Pfam (PF00252)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
48AJ60S ribosomal protein L11-Apolymer16919266.11UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L16,Large ribosomal subunit protein uL5-A,RP39,YL22
49AL60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL13-A
50AM60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL14-A
51AN60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
52AO60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
53AP60S ribosomal protein L17-Apolymer17519687.41UniProt (P05740)
Pfam (PF00237)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
54AQ60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
55AR60S ribosomal protein L19-Apolymer18821631.11UniProt (P0CX82)
Pfam (PF01280)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
56AS60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
57AT60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL21-A
58AU60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
59AV60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
60AW60S ribosomal protein L24-Apolymer637384.71UniProt (P04449)
Pfam (PF01246)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
61AX60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
62AY60S ribosomal protein L26-Apolymer12614134.61UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
63AZ60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL27-A
64Aa60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
65Ab60S ribosomal protein L29polymer586560.71UniProt (P05747)
Pfam (PF01779)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL29,YL43
66Ac60S ribosomal protein L30polymer9710558.31UniProt (P14120)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
67Ad60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
68Ae60S ribosomal protein L32polymer12714478.11UniProt (P38061)
Pfam (PF01655)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL32
69Af60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
70Ag60S ribosomal protein L34-Apolymer11212608.81UniProt (P87262)
Pfam (PF01199)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL34-A
71Ah60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL29-A
72Ai60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
73Aj60S ribosomal protein L37-Apolymer879746.21UniProt (P49166)
Pfam (PF01907)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
74Ak60S ribosomal protein L38polymer778714.41UniProt (P49167)
Pfam (PF01781)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL38
75Al60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
76Am60S ribosomal protein L40-Apolymer526032.31UniProt (P0CH08)
Pfam (PF01020)
In PDB
Saccharomyces cerevisiae (Baker's yeast)CEP52,Large ribosomal subunit protein eL40-A
77An60S ribosomal protein L41-Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L47,Large ribosomal subunit protein eL41-A,YL41
78Ao60S ribosomal protein L42-Apolymer10512115.51UniProt (P0CX27)
Pfam (PF00935)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
79Ap60S ribosomal protein L43-Apolymer919981.81UniProt (P0CX25)
Pfam (PF01780)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
80B5, A1, A3, Af, BD...MAGNESIUM IONnon-polymer24.3366Chemie (MG)
81Bb, AoZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
BI: 2 - 200 (UniProt: P0CX39)
PDBExternal DatabaseDetails
-Lys 124deletion
-Lys 125deletion
-Asn 126deletion
-Val 127deletion
-Lys 128deletion
-Glu 129deletion
-Glu 130deletion
-Glu 131deletion
-Thr 132deletion
-Val 133deletion
-Ala 134deletion
BR: 2 - 126 (UniProt: P02407)
PDBExternal DatabaseDetails
-Ser 96deletion
-Asn 97deletion
-Gly 98deletion
-Val 99deletion
Bf: 93 - 152 (UniProt: P05759)
PDBExternal DatabaseDetails
Ala 97Lys 97conflict
-Cys 126deletion
-Gly 127deletion
-Ala 128deletion
AE: 2 - 176 (UniProt: Q02326)
PDBExternal DatabaseDetails
-Lys 110deletion
-Leu 111deletion
-Thr 112deletion
-Lys 113deletion
-Lys 114deletion
-Glu 115deletion
-Lys 116deletion
-Lys 117deletion
-Glu 118deletion
-Ala 119deletion
-Asn 120deletion
-Leu 121deletion
-Phe 122deletion
-Pro 123deletion
-Glu 124deletion
-Gln 125deletion
-Gln 126deletion
-Asn 127deletion
-Lys 128deletion
AI: 2 - 218 (UniProt: P41805)
PDBExternal DatabaseDetails
-Met 102deletion
-Leu 103deletion
-Ser 104deletion
-Cys 105deletion
-Ala 106deletion
-Gly 107deletion
-Ala 108deletion
-Asp 109deletion
-Arg 110deletion
-Leu 111deletion
-Gln 112deletion
-Gln 113deletion
AP: 2 - 184 (UniProt: P05740)
PDBExternal DatabaseDetails
-Ala 156deletion
-Val 157deletion
-Ala 158deletion
-Lys 159deletion
-Ala 160deletion
-Ala 161deletion
-Glu 162deletion
-Lys 163deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains79
Total formula weight2931725.2
Non-Polymers*Number of molecules368
Total formula weight9026.4
All*Total formula weight2940751.6
*Water molecules are not included.

219140

PDB entries from 2024-05-01

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