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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7K00

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A16S rRNApolymer1542499873.41Escherichia coli
2B30S ribosomal protein S2polymer24126781.71UniProt (D7ZK99)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
3C30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
4D30S ribosomal protein S4polymer20623514.21UniProt (D7Z9H7)
Pfam (PF01479)
Pfam (PF00163)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
5E30S ribosomal protein S5polymer16717629.41UniProt (D7Z9H2)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli
6F30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
7G30S ribosomal protein S7polymer17920055.21UniProt (A0A5Q2GFB5)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)
In PDB		Escherichia coli
8H30S ribosomal protein S8polymer13014146.61UniProt (D7Z9G9)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
9I30S ribosomal protein S9polymer13014886.31UniProt (D7ZES9)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
10J30S ribosomal protein S10polymer10311755.61UniProt (D7Z9F4)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
11K30S ribosomal protein S11polymer12913872.01UniProt (S1ELC2)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
12L30S ribosomal protein S12polymer12413814.21UniProt (I2UHF1)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
13M30S ribosomal protein S13polymer11813128.51UniProt (H4UQ02)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
14N30S ribosomal protein S14polymer10111606.61UniProt (D7Z9G8)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
15O30S ribosomal protein S15polymer8910290.81UniProt (D7ZEL4)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
16P30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
17Q30S ribosomal protein S17polymer849724.51UniProt (D7Z9G4)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
18R30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
19S30S ribosomal protein S19polymer9210455.41UniProt (D7Z9F9)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
20T30S ribosomal protein S20polymer879708.51UniProt (D7ZAS2)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
21U30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
22a23S rRNApolymer2904941811.61Escherichia coli
23b5S rRNApolymer12038790.11GenBank (1273279017)Escherichia coli
24c50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
25d50S ribosomal protein L3polymer20922291.61UniProt (I2X6U5)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli
26e50S ribosomal protein L4polymer20122121.61UniProt (D7Z9F6)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
27f50S ribosomal protein L5polymer17920333.61UniProt (D7Z9G7)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
28g50S ribosomal protein L6polymer17718932.81UniProt (D7Z9H0)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
29h50S ribosomal protein L9polymer14915789.01UniProt (D7ZI15)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
30i50S ribosomal protein L13polymer14216050.61UniProt (D7ZET0)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
31j50S ribosomal protein L14polymer12313565.11UniProt (D7Z9G5)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
32k50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
33l50S ribosomal protein L16polymer13615329.31UniProt (L4V2J8)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli
34m50S ribosomal protein L17polymer12714393.71UniProt (D6I1Y5)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
35n50S ribosomal protein L18polymer11712794.71UniProt (D7Z9H1)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
36o50S ribosomal protein L19polymer11513159.31UniProt (D7ZKU3)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
37p50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
38q50S ribosomal protein L21polymer10311586.41UniProt (D7ZEN7)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
39r50S ribosomal protein L22polymer11012253.41UniProt (D7Z9G0)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli
40s50S ribosomal protein L23polymer10011222.21UniProt (D7X2Z9)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
41t50S ribosomal protein L24polymer10411339.31UniProt (D7Z9G6)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
42u50S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
43v50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
44w50S ribosomal protein L28polymer789027.61UniProt (S0YB49)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
45x50S ribosomal protein L29polymer637286.51UniProt (D7Z9G3)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
46y50S ribosomal protein L30polymer596554.81UniProt (D7Z9H3)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
47z50S ribosomal protein L32polymer576463.41UniProt (D7ZGG2)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
48050S ribosomal protein L33polymer556388.61UniProt (D7Z9P0)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
49150S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
50250S ribosomal protein L35polymer657313.01UniProt (D7Z814)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli
51350S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
52450S ribosomal protein L31polymer707887.11UniProt (D7ZFP6)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli
53XmRNApolymer289099.51Escherichia coli
54YA-site tRNA-valpolymer7624483.61GenBank (1848841577)Escherichia coli
55ZP-site tRNA-fMetpolymer7624497.61GenBank (1848949880)Escherichia coli
565E-site tRNApolymer2589.41Escherichia coli
57APAROMOMYCINnon-polymer615.61Chemie (PAR)
58A, a, b, c, d...MAGNESIUM IONnon-polymer24.3309Chemie (MG)
59a, ASPERMIDINEnon-polymer145.216Chemie (SPD)
60aSPERMINEnon-polymer202.31Chemie (SPM)
613, 4ZINC IONnon-polymer65.42Chemie (ZN)
62waterwater18.07248Chemie (HOH)
Sequence modifications
K: 1 - 129 (UniProt: S1ELC2)
PDBExternal DatabaseDetails
Ias 119Asn 119conflict
l: 1 - 136 (UniProt: L4V2J8)
PDBExternal DatabaseDetails
Ms6 82Met 82conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains56
Total formula weight2199188.6
Non-Polymers*Number of molecules329
Total formula weight10783.0
All*Total formula weight2209971.6
*Water molecules are not included.

219869

PDB entries from 2024-05-15

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