7JJI
Structure of SARS-CoV-2 3Q-2P full-length prefusion spike trimer (C3 symmetry)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein | polymer | 1273 | 141176.1 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | a, b, c, D, d... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 45 | In PDB GlyTouCan (G42666HT) | |||
| 3 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 4 | B, C, A | 2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-6-O-(2-{[(9E)-octadec-9-enoyl]oxy}ethyl)-alpha-L-xylo-hexofuranoside | non-polymer | 604.8 | 3 | Chemie (VCG) | |||
| 5 | C, A, B | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Gln 682 | Arg 682 | engineered mutation |
| Gln 683 | Arg 683 | engineered mutation |
| Gln 685 | Arg 685 | engineered mutation |
| Pro 986 | Lys 986 | engineered mutation |
| Pro 987 | Val 987 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 423528.4 | |
| Branched | Number of molecules | 45 |
| Total formula weight | 19098.0 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 3319.4 | |
| All* | Total formula weight | 445945.8 |
