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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7F9O

PSI-NDH supercomplex of Barley

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, ePhotosystem I P700 chlorophyll a apoprotein A1polymer75083217.22UniProt (S4Z1K7)
Pfam (PF00223)
In PDB		Hordeum vulgare subsp. spontaneumPSI-A,PsaA
2B, fPhotosystem I P700 chlorophyll a apoprotein A2polymer73482693.92UniProt (S4Z289)
Pfam (PF00223)
In PDB		Hordeum vulgare subsp. spontaneumPSI-B,PsaB
3C, gPhotosystem I iron-sulfur centerpolymer818909.32UniProt (S4YZ47)
Pfam (PF12838)
In PDB		Hordeum vulgare subsp. spontaneumPhotosystem I reaction center subunit PSI-C,9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC
4D, hPhotosystem I reaction center subunit II, chloroplasticpolymer20521958.12UniProt (P36213)
Pfam (PF02531)
In PDB		Hordeum vulgare subsp. spontaneumPhotosystem I 20 kDa subunit,PSI-D
5E, iPhotosystem I reaction center subunit IV, chloroplasticpolymer14715476.52UniProt (P13194)
Pfam (PF02427)
In PDB		Hordeum vulgare subsp. spontaneumPSI-E,Photosystem I 10.8 kDa polypeptide
6F, jPhotosystem I reaction center subunit III, chloroplasticpolymer23524866.62UniProt (P13192)
Pfam (PF02507)
In PDB		Hordeum vulgare subsp. spontaneumPSI-F,Light-harvesting complex I 17 kDa protein
7H, kPhotosystem I reaction center subunit VI, chloroplasticpolymer14314900.12UniProt (P20143)
Pfam (PF03244)
In PDB		Hordeum vulgare subsp. spontaneumPSI-H,Light-harvesting complex I 11 kDa protein
8I, lPhotosystem I reaction center subunit VIIIpolymer364010.92UniProt (S4Z1D9)
Pfam (PF00796)
In PDB		Hordeum vulgare subsp. spontaneumPSI-I
9J, mPhotosystem I reaction center subunit IXpolymer424747.62UniProt (S4Z1E9)
Pfam (PF01701)
In PDB		Hordeum vulgare subsp. spontaneumPSI-J
10K, nPhotosystem I reaction center subunit psaK, chloroplasticpolymer13113742.92UniProt (P36886)
Pfam (PF01241)
In PDB		Hordeum vulgare subsp. spontaneumPhotosystem I reaction center subunit PSI-K,Light-harvesting complex I 7 kDa protein,PSI-K,Photosystem I subunit X
11L, oPhotosystem I reaction center subunit XI, chloroplasticpolymer20922229.72UniProt (P23993)
Pfam (PF02605)
In PDB		Hordeum vulgare subsp. spontaneumPSI-L,PSI subunit V
121, pChlorophyll a-b binding protein Lhca1polymer24726691.42UniProt (A0A287WC32)
In PDB		Hordeum vulgare subsp. spontaneum
132Chlorophyll a-b binding protein, chloroplasticpolymer25527320.01UniProt (Q43485)
Pfam (PF00504)
In PDB		Hordeum vulgare subsp. spontaneum
143, qChlorophyll a-b binding protein, chloroplasticpolymer26929374.52UniProt (F2DAN8)
Pfam (PF00504)
In PDB		Hordeum vulgare subsp. spontaneumChlorophyll a-b binding protein Lhca3
155Chlorophyll a-b binding protein Lhca5polymer25727618.71Hordeum vulgare subsp. spontaneum
16GNAD(P)H-quinone oxidoreductase subunit 1, chloroplasticpolymer34638544.31UniProt (P92432)
Pfam (PF00146)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H-quinone oxidoreductase subunit A,NAD(P)H dehydrogenase subunit 1,NDH subunit 1,NADH-plastoquinone oxidoreductase subunit 1
17MNAD(P)H-quinone oxidoreductase subunit 2, chloroplasticpolymer48353452.31UniProt (S4Z268)
Pfam (PF19530)
Pfam (PF00361)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H-quinone oxidoreductase subunit B,NAD(P)H dehydrogenase,subunit 2,NADH-plastoquinone oxidoreductase subunit 2
18NNAD(P)H-quinone oxidoreductase subunit 3, chloroplasticpolymer11713299.61UniProt (S4Z1L1)
Pfam (PF00507)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H-quinone oxidoreductase subunit C,NAD(P)H dehydrogenase subunit 3,NADH-plastoquinone oxidoreductase subunit 3
19ONAD(P)H-quinone oxidoreductase chain 4, chloroplasticpolymer49956222.81UniProt (S4Z8N2)
Pfam (PF00361)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H-quinone oxidoreductase chain D,NAD(P)H dehydrogenase,chain 4,NADH-plastoquinone oxidoreductase chain 4
20PNAD(P)H-quinone oxidoreductase subunit 4L, chloroplasticpolymer10011199.21UniProt (S4Z1I1)
Pfam (PF00420)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H-quinone oxidoreductase subunit E,,NAD(P)H dehydrogenase subunit 4L,NADH-plastoquinone oxidoreductase subunit 4L
21QNADH-plastoquinone oxidoreductase subunit 5polymer77787552.91UniProt (A0A7T7JN26)
Pfam (PF00662)
Pfam (PF00361)
Pfam (PF01010)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H-quinone oxidoreductase subunit F, chloroplastic
22RNAD(P)H-quinone oxidoreductase subunit 6, chloroplasticpolymer17619587.11UniProt (A0A4Y5SEJ9)
Pfam (PF00499)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H-quinone oxidoreductase subunit G, chloroplastic
23SNAD(P)H-quinone oxidoreductase subunit H, chloroplasticpolymer38344563.41UniProt (S4Z272)
Pfam (PF00346)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H dehydrogenase,subunit H,NADH-plastoquinone oxidoreductase 49 kDa subunit,NADH-plastoquinone oxidoreductase subunit H
24TNAD(P)H-quinone oxidoreductase subunit I, chloroplasticpolymer16519271.11UniProt (A0A218LNN1)
Pfam (PF13237)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H dehydrogenase subunit I,NDH subunit I,NADH-plastoquinone oxidoreductase subunit I
25UNAD(P)H-quinone oxidoreductase subunit J, chloroplasticpolymer15918733.21UniProt (Q7GT16)
Pfam (PF00329)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H dehydrogenase subunit J,NADH-plastoquinone oxidoreductase subunit J
26VNAD(P)H-quinone oxidoreductase subunit K, chloroplasticpolymer24527568.81UniProt (S4Z232)
Pfam (PF01058)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H dehydrogenase subunit K,NADH-plastoquinone oxidoreductase subunit K
27WNAD(P)H-quinone oxidoreductase subunit L, chloroplasticpolymer19222240.31UniProt (F2CUR7)
Pfam (PF10716)
In PDB		Hordeum vulgare subsp. spontaneum
28XNAD(P)H-quinone oxidoreductase subunit M, chloroplasticpolymer21324051.01UniProt (F2D138)
Pfam (PF10664)
In PDB		Hordeum vulgare subsp. spontaneumNAD(P)H dehydrogenase subunit M,NADH-plastoquinone oxidoreductase subunit M
29YNAD(P)H-quinone oxidoreductase subunit N, chloroplasticpolymer23325928.01UniProt (A0A287M953)
In PDB		Hordeum vulgare subsp. spontaneum
30ZUnidentified stromal proteinpolymer615209.41Hordeum vulgare subsp. spontaneum
31aPhotosynthetic NDH subunit of subcomplex L1polymer15417835.81Hordeum vulgare subsp. spontaneum
32bPhotosynthetic NDH subunit of subcomplex L2polymer21623946.51UniProt (F2CTW7)
Pfam (PF05757)
In PDB		Hordeum vulgare subsp. spontaneum
33cPhotosynthetic NDH subunit of subcomplex L2polymer22724734.01Hordeum vulgare subsp. spontaneum
344Photosynthetic NDH subunit of subcomplex L4polymer13013954.41Hordeum vulgare subsp. spontaneum
35dPhotosynthetic NDH subunit of subcomplex L5polymer24325818.41UniProt (F2CTD7)
Pfam (PF00160)
In PDB		Hordeum vulgare subsp. spontaneum
366Photosynthetic NDH subunit of subcomplex B1polymer46951675.91UniProt (F2D3G1)
In PDB		Hordeum vulgare subsp. spontaneum
377Photosynthetic NDH subunit of subcomplex B2polymer36138080.01UniProt (F2D932)
In PDB		Hordeum vulgare subsp. spontaneum
388Photosynthetic NDH subunit of subcomplex B3polymer11913313.31UniProt (F2DD79)
Pfam (PF00111)
In PDB		Hordeum vulgare subsp. spontaneum
399Photosynthetic NDH subunit of subcomplex B4polymer839756.81Hordeum vulgare subsp. spontaneum
400Photosynthetic NDH subunit of subcomplex B5polymer15518146.11UniProt (F2DWH9)
In PDB		Hordeum vulgare subsp. spontaneum
41rChlorophyll a-b binding protein Lhca4polymer19721976.81UniProt (Q9LKC7)
Pfam (PF00504)
In PDB		Hordeum vulgare subsp. spontaneumChlorophyll a-b binding protein, chloroplastic
42sChlorophyll a-b binding protein, chloroplasticpolymer21123904.21UniProt (F2D0D5)
Pfam (PF00504)
In PDB		Hordeum vulgare subsp. spontaneum
43A, eCHLOROPHYLL A ISOMERnon-polymer893.52Chemie (CL0)
44A, B, 2, 3, e...CHLOROPHYLL Anon-polymer893.5273Chemie (CLA)
45e, A, f, BPHYLLOQUINONEnon-polymer450.74Chemie (PQN)
46f, B, 2, s, p...1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLEnon-polymer723.011Chemie (LHG)
47B, L, e, A, 1...BETA-CAROTENEnon-polymer536.951Chemie (BCR)
48A, g, f, C, 8IRON/SULFUR CLUSTERnon-polymer351.67Chemie (SF4)
49B, m, J, fDIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.34Chemie (DGD)
505, 2, F, m, r1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.27Chemie (LMG)
511, 5, r, 3, q...(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOLnon-polymer568.912Chemie (LUT)
52q, 2, s, p, 1...CHLOROPHYLL Bnon-polymer907.523Chemie (CHL)
535, r, 2, s(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOLnon-polymer600.94Chemie (XAT)
54Q1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLnon-polymer795.12Chemie (SQD)
Sequence modifications
1, p: -8 - 238 (UniProt: A0A287WC32)
PDBExternal DatabaseDetails
Phe 73Unk 120conflict
Glu 74Unk 121conflict
Arg 75Unk 122conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains55
Total formula weight1511142.6
Non-Polymers*Number of molecules400
Total formula weight326306.3
All*Total formula weight1837448.9
*Water molecules are not included.

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PDB entries from 2024-05-15

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