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7B3B

Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -3 (structure 1)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ARNA-directed RNA polymerase nsp12polymer935107053.21UniProt (P0DTD1)
Pfam (PF06478)
Pfam (PF00680)
In PDB
Severe acute respiratory syndrome coronavirus 2Pol,RdRp,Non-structural protein 12,nsp12
2BNon-structural protein 8polymer20122175.31UniProt (P0DTD1)
Pfam (PF08717)
In PDB
Severe acute respiratory syndrome coronavirus 2nsp8
3CNon-structural protein 7polymer869521.11UniProt (P0DTD1)
Pfam (PF08716)
In PDB
Severe acute respiratory syndrome coronavirus 2nsp7
4PDNA/RNA (5'-R(P*CP*UP*AP*CP*GP*CP*G)-D(P*(RMP))-R(P*UP*G)-3')polymer154831.91Severe acute respiratory syndrome coronavirus 2
5TRNA (5'-R(P*UP*GP*CP*AP*UP*CP*GP*CP*GP*UP*AP*G)-3')polymer5718138.71Severe acute respiratory syndrome coronavirus 2
6AZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
A: 1 - 932 (UniProt: P0DTD1)
PDBExternal DatabaseDetails
Ser -2-expression tag
Asn -1-expression tag
Ala 0-expression tag
B: 1 - 198 (UniProt: P0DTD1)
PDBExternal DatabaseDetails
Ser -2-expression tag
Asn -1-expression tag
Ala 0-expression tag
C: 1 - 83 (UniProt: P0DTD1)
PDBExternal DatabaseDetails
Ser -2-expression tag
Asn -1-expression tag
Ala 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight161720.2
Non-Polymers*Number of molecules2
Total formula weight130.8
All*Total formula weight161851.0
*Water molecules are not included.

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PDB entries from 2024-05-15

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