7A01
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | E1 | INTERNAL RIBOSOME ENTRY SITE | polymer | 153 | 48550.5 | 1 | GenBank (JN000306.1) | Halastavi arva RNA virus | |
| 2 | e2 | 28S RIBOSOMAL RNA | polymer | 3825 | 1239030.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 3 | h2 | 5.8S RIBOSOMAL RNA | polymer | 156 | 50143.6 | 1 | GenBank (4CXE_3) | Oryctolagus cuniculus | |
| 4 | d2 | 5S RIBOSOMAL RNA | polymer | 120 | 38691.9 | 1 | GenBank (4CXE_4) | Oryctolagus cuniculus | |
| 5 | p2 | Uncharacterized protein | polymer | 69 | 8092.7 | 1 | UniProt (G1U001) Pfam (PF01781) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 6 | k2 | eL14 | polymer | 131 | 13972.4 | 1 | UniProt (G1T6D1) Pfam (PF00238) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 7 | l2 | Ribosomal protein L24 | polymer | 63 | 7512.8 | 1 | UniProt (G1SE28) Pfam (PF01246) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 8 | m2 | Uncharacterized protein | polymer | 119 | 13856.4 | 1 | UniProt (G1SE76) Pfam (PF03939) Pfam (PF00276) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 9 | o2 | Ribosomal protein L26 | polymer | 134 | 15891.8 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 10 | q2 | uL15 | polymer | 147 | 16489.4 | 1 | UniProt (G1SNY0) Pfam (PF00828) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 11 | r2 | 60S ribosomal protein L29 | polymer | 75 | 8706.3 | 1 | UniProt (G1TN82) Pfam (PF01779) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 12 | t2 | uL4 | polymer | 362 | 41101.4 | 1 | UniProt (G1SVW5) Pfam (PF00573) Pfam (PF14374) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 13 | u2 | eL31 | polymer | 107 | 12635.7 | 1 | UniProt (G1SHG0) Pfam (PF01198) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 14 | v2 | eL32 | polymer | 128 | 15022.0 | 1 | UniProt (G1TUN8) Pfam (PF01655) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 15 | w2 | 60S RIBOSOMAL PROTEIN UL13 | polymer | 199 | 23144.9 | 1 | UniProt (G5B8P1) Pfam (PF00572) In PDB | Oryctolagus cuniculus | |
| 16 | x2 | eL33 | polymer | 109 | 12449.6 | 1 | UniProt (G1SF08) Pfam (PF01247) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 17 | y2 | eL34 | polymer | 114 | 12994.6 | 1 | UniProt (G1U945) Pfam (PF01199) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 18 | 92 | Uncharacterized protein | polymer | 244 | 26570.1 | 1 | UniProt (G1TT27) Pfam (PF00181) Pfam (PF03947) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 19 | A2 | uL29 | polymer | 122 | 14435.4 | 1 | UniProt (G1SIT5) Pfam (PF00831) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 20 | B2 | 60S ribosomal protein L36 | polymer | 102 | 11888.4 | 1 | UniProt (G1TTQ5) Pfam (PF01158) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 21 | C2 | Ribosomal protein L37 | polymer | 86 | 10090.9 | 1 | UniProt (U3KPD5) Pfam (PF01907) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 22 | D2 | ribosomal protein eL39 | polymer | 50 | 6295.6 | 1 | UniProt (G1SYU7) Pfam (PF00832) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 23 | E2 | 60S RIBOSOMAL PROTEIN EL40 | polymer | 52 | 6199.6 | 1 | UniProt (P63048) Pfam (PF01020) In PDB | Oryctolagus cuniculus | |
| 24 | F2 | eL42 | polymer | 104 | 12198.6 | 1 | UniProt (G1T040) Pfam (PF00935) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 25 | G2 | 60S ribosomal protein L5 | polymer | 292 | 34006.3 | 1 | UniProt (G1SYJ6) Pfam (PF17144) Pfam (PF14204) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 26 | H2 | uL22 | polymer | 153 | 17758.7 | 1 | UniProt (G1TVT6) Pfam (PF00237) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 27 | I2 | ribosomal protein eL43 | polymer | 91 | 10168.2 | 1 | UniProt (G1SY53) Pfam (PF01780) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 28 | J2 | Uncharacterized protein | polymer | 125 | 14319.8 | 1 | UniProt (G1U7L1) Pfam (PF01778) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 29 | K2 | 60S acidic ribosomal protein P0 | polymer | 198 | 21747.3 | 1 | UniProt (G1SPK4) Pfam (PF00466) Pfam (PF17777) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 30 | L2 | Ribosomal protein L10 (Predicted) | polymer | 102 | 11944.1 | 1 | UniProt (B7NZQ2) Pfam (PF00252) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 31 | M2 | Uncharacterized protein | polymer | 163 | 17689.5 | 1 | UniProt (G1SMR7) Pfam (PF03946) Pfam (PF00298) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 32 | R2 | Ribosomal_L6e_N domain-containing protein | polymer | 35 | 4063.8 | 1 | UniProt (G1U1N5) Pfam (PF03868) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 33 | S2 | 60S RIBOSOMAL PROTEIN EL18 | polymer | 187 | 21556.5 | 1 | UniProt (Q07020) Pfam (PF17135) In PDB | Oryctolagus cuniculus | |
| 34 | T2 | 60S ribosomal protein L6 | polymer | 201 | 22881.1 | 1 | UniProt (G1SKF7) Pfam (PF01159) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 35 | U2 | uL30 | polymer | 225 | 26658.8 | 1 | UniProt (G1SV32) Pfam (PF08079) Pfam (PF00327) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 36 | V2 | 60S RIBOSOMAL PROTEIN EL8 | polymer | 241 | 27452.5 | 1 | UniProt (P62424) Pfam (PF01248) In PDB | Oryctolagus cuniculus | |
| 37 | W2 | Uncharacterized protein | polymer | 190 | 21627.2 | 1 | UniProt (G1SWI6) Pfam (PF00347) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 38 | X2 | Ribosomal protein L10 (Predicted) | polymer | 102 | 11682.7 | 1 | UniProt (B7NZQ2) Pfam (PF00252) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 39 | Y2 | Ribosomal protein L11 | polymer | 169 | 19270.3 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 40 | 02 | Ribosomal protein L14 | polymer | 138 | 16217.4 | 1 | UniProt (U3KNW6) Pfam (PF01929) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 41 | 12 | Ribosomal protein L15 | polymer | 203 | 24076.1 | 1 | UniProt (G1T0C1) Pfam (PF00827) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 42 | 22 | 60S ribosomal protein L27 | polymer | 135 | 15704.6 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 43 | 32 | 60S RIBOSOMAL PROTEIN EL19 | polymer | 180 | 21613.0 | 1 | UniProt (Q3T0W9) Pfam (PF01280) In PDB | Oryctolagus cuniculus | |
| 44 | 42 | Ribosomal protein | polymer | 217 | 24879.4 | 1 | UniProt (G1SKZ8) Pfam (PF00687) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 45 | 52 | uL3 | polymer | 394 | 45119.8 | 1 | UniProt (G1TL06) Pfam (PF00297) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 46 | 62 | 60S RIBOSOMAL PROTEIN EL20 | polymer | 175 | 20677.3 | 1 | UniProt (Q3T003) Pfam (PF01775) In PDB | Oryctolagus cuniculus | |
| 47 | 72 | eL21 | polymer | 159 | 18478.8 | 1 | UniProt (G1SHQ2) Pfam (PF01157) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 48 | 82 | Ribosomal protein L22 | polymer | 99 | 11481.2 | 1 | UniProt (G1TSG1) Pfam (PF01776) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 49 | K3 | 18S RIBOSOMAL RNA | polymer | 1801 | 580908.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 50 | s3 | 40S RIBOSOMAL PROTEIN ES30 | polymer | 43 | 5011.0 | 1 | UniProt (P62866) Pfam (PF04758) In PDB | Oryctolagus cuniculus | |
| 51 | 13 | Ribosomal protein L30 | polymer | 94 | 10498.3 | 1 | UniProt (G1TDL2) Pfam (PF01248) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 52 | Q3 | 40S ribosomal protein S27a | polymer | 188 | 21431.7 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) In PDB | Oryctolagus cuniculus (Rabbit) | Ubiquitin carboxyl extension protein 80,Ubiquitin-40S ribosomal protein S27a |
| 53 | G3 | Ribosomal protein S11 | polymer | 153 | 17786.0 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 54 | G5 | ribosomal protein uS13 | polymer | 137 | 16170.8 | 1 | UniProt (G1TPG3) Pfam (PF00416) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 55 | a3 | ribosomal protein RACK1 | polymer | 313 | 34669.1 | 1 | UniProt (G1SJB4) Pfam (PF00400) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 56 | a5 | Uncharacterized protein | polymer | 136 | 14544.7 | 1 | UniProt (G1T1F0) Pfam (PF00411) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 57 | A3 | ribosomal protein uS19 | polymer | 127 | 15151.9 | 1 | UniProt (G1U0Q2) Pfam (PF00203) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 58 | T3 | Ribosomal protein S23 | polymer | 141 | 15626.4 | 1 | UniProt (G1SZ47) Pfam (PF00164) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 59 | U3 | 40S_SA_C domain-containing protein | polymer | 208 | 23390.8 | 1 | UniProt (G1TJH8) Pfam (PF00318) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 60 | V3 | 40S ribosomal protein S3a | polymer | 213 | 24759.1 | 1 | UniProt (G1SS70) Pfam (PF01015) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 61 | W3 | S5 DRBM domain-containing protein | polymer | 218 | 24091.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 62 | X3 | 60s ribosomal protein l41 | polymer | 23 | 3213.1 | 1 | UniProt (A0A087WNH4) Pfam (PF05162) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 63 | Y3 | Ribosomal protein S3 | polymer | 227 | 25158.5 | 1 | UniProt (G1TNM3) Pfam (PF07650) Pfam (PF00189) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 64 | j3 | 40S ribosomal protein S4,40S ribosomal protein S4 | polymer | 262 | 29527.7 | 1 | UniProt (G1TK17) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 65 | J5 | Ribosomal protein S15a | polymer | 129 | 14734.4 | 1 | UniProt (G1TG89) Pfam (PF00410) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 66 | N3 | Ribosomal protein S5 | polymer | 191 | 21525.9 | 1 | UniProt (U3KMN4) Pfam (PF00177) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 67 | b3 | 40S ribosomal protein S6 | polymer | 237 | 27471.5 | 1 | UniProt (G1TM55) Pfam (PF01092) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 68 | B3 | Uncharacterized protein | polymer | 141 | 15975.8 | 1 | UniProt (G1SGX4) Pfam (PF00380) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 69 | f3 | ribosomal protein eS28 | polymer | 64 | 7263.4 | 1 | UniProt (G1TIB4) Pfam (PF01200) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 70 | F3 | ribosomal protein uS15 | polymer | 150 | 17128.2 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 71 | c3 | 40S ribosomal protein S8 | polymer | 206 | 24003.0 | 1 | UniProt (G1TJW1) Pfam (PF01201) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 72 | C3 | Uncharacterized protein | polymer | 129 | 14969.4 | 1 | UniProt (G1TU13) Pfam (PF00833) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 73 | d3 | Ribosomal protein S9 (Predicted) | polymer | 185 | 21649.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 74 | D3 | 40S RIBOSOMAL PROTEIN ES21 | polymer | 83 | 9043.3 | 1 | UniProt (A0A1Z5KTU7) Pfam (PF01249) In PDB | Oryctolagus cuniculus | |
| 75 | e3 | 40S ribosomal protein S12 | polymer | 124 | 13766.1 | 1 | UniProt (G1SFR8) Pfam (PF01248) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 76 | E3 | S10_plectin domain-containing protein | polymer | 98 | 11774.0 | 1 | UniProt (G1T168) Pfam (PF03501) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 77 | H3 | ribosomal protein uS14 | polymer | 53 | 6364.4 | 1 | UniProt (G1U7M4) Pfam (PF00253) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 78 | H5 | Uncharacterized protein | polymer | 141 | 15812.3 | 1 | UniProt (G1TN62) Pfam (PF01090) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 79 | P3 | 40S RIBOSOMAL PROTEIN ES7 | polymer | 189 | 21603.2 | 1 | UniProt (A6H769) Pfam (PF01251) In PDB | Oryctolagus cuniculus | |
| 80 | I3 | Ribosomal_S10 domain-containing protein | polymer | 104 | 11765.9 | 1 | UniProt (A0A5F9CX53) Pfam (PF00338) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 81 | I5 | 40S ribosomal protein S24 | polymer | 126 | 14604.3 | 1 | UniProt (A0A5F9CBF4) Pfam (PF01282) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 82 | L3 | 40S ribosomal protein S27 | polymer | 83 | 9349.0 | 1 | UniProt (G1TZ76) Pfam (PF01667) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 83 | M3 | ribosomal protein eS25 | polymer | 75 | 8526.1 | 1 | UniProt (G1TDB3) Pfam (PF03297) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 84 | O3 | 40S RIBOSOMAL PROTEIN ES26 | polymer | 98 | 11184.2 | 1 | UniProt (Q56JV1) Pfam (PF01283) In PDB | Oryctolagus cuniculus | |
| 85 | a7 | 60S ribosomal protein L13 | polymer | 210 | 24200.5 | 1 | UniProt (G1TPV0) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 86 | C2, E2, F2, I2, H3... | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
Sequence modifications
w2: 5 - 203 (UniProt: G5B8P1)
T2: 91 - 291 (UniProt: G1SKF7)
82: 17 - 115 (UniProt: G1TSG1)
j3: 2 - 130 (UniProt: G1TK17)
j3: 131 - 263 (UniProt: G1TK17)
c3: 2 - 207 (UniProt: G1TJW1)
D3: 1 - 83 (UniProt: A0A1Z5KTU7)
a7: 2 - 211 (UniProt: G1TPV0)
| PDB | External Database | Details |
|---|---|---|
| Leu 174 | Ile 170 | variant |
| Asp 194 | Glu 190 | variant |
| PDB | External Database | Details |
|---|---|---|
| Gln 224 | Lys 224 | variant |
| Lys 231 | Gln 231 | variant |
| PDB | External Database | Details |
|---|---|---|
| Gly 32 | Arg 32 | variant |
| Ala 36 | Glu 36 | variant |
| Phe 39 | Ser 39 | variant |
| Gly 54 | Arg 54 | variant |
| Val 60 | Ala 60 | variant |
| Arg 97 | His 97 | variant |
j3: 131 - 263 (UniProt: G1TK17)
c3: 2 - 207 (UniProt: G1TJW1)
| PDB | External Database | Details |
|---|---|---|
| Arg 47 | Gly 47 | variant |
| PDB | External Database | Details |
|---|---|---|
| Ser 3 | Asn 3 | variant |
| Asn 4 | Asp 4 | variant |
| Pro 33 | Gln 33 | variant |
| Ser 50 | Phe 50 | variant |
| His 76 | Asp 76 | variant |
| PDB | External Database | Details |
|---|---|---|
| Ala 47 | - | insertion |
| Pro 48 | - | insertion |
| Arg 49 | - | insertion |
| Pro 50 | - | insertion |
| Ala 51 | - | insertion |
| Ala 52 | - | insertion |
| Gly 53 | - | insertion |
| Pro 54 | - | insertion |
| Ile 55 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 85 |
| Total formula weight | 3331693.9 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 392.5 | |
| All* | Total formula weight | 3332086.4 |
