6VNP
Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dT
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | P, B, E, H | DNA (5'-D(P*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*T)-3') | polymer | 14 | 4400.9 | 4 | Homo sapiens | ||
2 | T, C, F, I | DNA (5'-D(*TP*TP*CP*AP*T*(R5M)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') | polymer | 19 | 5691.7 | 4 | Homo sapiens | ||
3 | A, D, G, J | DNA polymerase IV | polymer | 341 | 39019.5 | 4 | UniProt (A0A0E3K6E9) Pfam (PF00817) Pfam (PF11798) Pfam (PF11799) UniProt (by SIFTS) (Q97W02) In PDB | Saccharolobus solfataricus | Pol IV |
4 | A, D, G, J | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine | non-polymer | 490.2 | 4 | Chemie (DZ4) | |||
5 | A, D, G, J | MAGNESIUM ION | non-polymer | 24.3 | 8 | Chemie (MG) | |||
6 | water | water | 18.0 | 363 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 196448.3 | |
Non-Polymers* | Number of molecules | 12 |
Total formula weight | 2155.2 | |
All* | Total formula weight | 198603.5 |