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6VMI

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA12s rRNApolymer954306112.11GenBank (1025814287)Homo sapiens (Human)
2AB28S ribosomal protein S2, mitochondrialpolymer29633298.21UniProt (Q9Y399)
Pfam (PF00318)
In PDB
Homo sapiens (Human)S2mt,Mitochondrial small ribosomal subunit protein uS2m
3AC28S ribosomal protein S24, mitochondrialpolymer16719046.21UniProt (Q96EL2)
Pfam (PF14955)
In PDB
Homo sapiens (Human)S24mt,Mitochondrial small ribosomal subunit protein uS3m,bMRP-47,bMRP47
4AE28S ribosomal protein S6, mitochondrialpolymer12514250.61UniProt (P82932)
Pfam (PF01250)
In PDB
Homo sapiens (Human)S6mt,Mitochondrial small ribosomal subunit protein bS6m
5AI28S ribosomal protein S11, mitochondrialpolymer19420648.81UniProt (P82912)
Pfam (PF00411)
In PDB
Homo sapiens (Human)S11mt,Cervical cancer proto-oncogene 2 protein,HCC-2,Mitochondrial small ribosomal subunit protein uS11m
6AJ28S ribosomal protein S12, mitochondrialpolymer13815200.91UniProt (O15235)
Pfam (PF00164)
In PDB
Homo sapiens (Human)S12mt,MT-RPS12,Mitochondrial small ribosomal subunit protein uS12m
7AK28S ribosomal protein S14, mitochondrialpolymer12815168.81UniProt (O60783)
Pfam (PF00253)
In PDB
Homo sapiens (Human)S14mt,Mitochondrial small ribosomal subunit protein uS14m
8AM28S ribosomal protein S16, mitochondrialpolymer13715371.91UniProt (Q9Y3D3)
Pfam (PF00886)
In PDB
Homo sapiens (Human)S16mt,Mitochondrial small ribosomal subunit protein bS16m
9AN28S ribosomal protein S17, mitochondrialpolymer13014526.11UniProt (Q9Y2R5)
Pfam (PF00366)
In PDB
Homo sapiens (Human)S17mt,Mitochondrial small ribosomal subunit protein uS17m
10AO28S ribosomal protein S18b, mitochondrialpolymer25829440.61UniProt (Q9Y676)
Pfam (PF01084)
In PDB
Homo sapiens (Human)S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2,Mitochondrial small ribosomal subunit protein bS18b,Mitochondrial small ribosomal subunit protein mS40
11AP28S ribosomal protein S18c, mitochondrialpolymer14215876.81UniProt (Q9Y3D5)
Pfam (PF01084)
In PDB
Homo sapiens (Human)S18mt-c,28S ribosomal protein S18-1,mitochondrial,MRP-S18-1,Mitochondrial small ribosomal subunit protein bS18c,Mitochondrial small ribosomal subunit protein bS18m
12AQ28S ribosomal protein S21, mitochondrialpolymer8710764.71UniProt (P82921)
Pfam (PF01165)
In PDB
Homo sapiens (Human)S21mt,Mitochondrial small ribosomal subunit protein bS21m
13AT28S ribosomal protein S25, mitochondrialpolymer17320146.41UniProt (P82663)
Pfam (PF05047)
In PDB
Homo sapiens (Human)S25mt,Mitochondrial small ribosomal subunit protein mS25
14AW28S ribosomal protein S28, mitochondrialpolymer18720878.81UniProt (Q9Y2Q9)
Pfam (PF10246)
In PDB
Homo sapiens (Human)S28mt,28S ribosomal protein S35,mitochondrial,S35mt,Mitochondrial small ribosomal subunit protein bS1m
15AX28S ribosomal protein S29, mitochondrialpolymer39845634.41UniProt (P51398)
Pfam (PF10236)
In PDB
Homo sapiens (Human)S29mt,Death-associated protein 3,DAP-3,Ionizing radiation resistance conferring protein,Mitochondrial small ribosomal subunit protein mS29
16A2Coiled-coil-helix-coiled-coil-helix domain-containing protein 1polymer11813498.81UniProt (Q96BP2)
Pfam (PF06747)
In PDB
Homo sapiens (Human)28S ribosomal protein S37,mitochondrial,MRP-S37,Mitochondrial small ribosomal subunit protein mS37,Nuclear protein C2360
17AH28S ribosomal protein S10, mitochondrialpolymer20123033.51UniProt (P82664)
Pfam (PF00338)
In PDB
Homo sapiens (Human)S10mt,Mitochondrial small ribosomal subunit protein uS10m
18AL28S ribosomal protein S15, mitochondrialpolymer25729903.31UniProt (P82914)
Pfam (PF00312)
In PDB
Homo sapiens (Human)S15mt,Mitochondrial small ribosomal subunit protein uS15m
19AR28S ribosomal protein S22, mitochondrialpolymer36041337.31UniProt (P82650)
Pfam (PF10245)
In PDB
Homo sapiens (Human)S22mt,Mitochondrial small ribosomal subunit protein mS22
20AS28S ribosomal protein S23, mitochondrialpolymer19021805.71UniProt (Q9Y3D9)
Pfam (PF10484)
In PDB
Homo sapiens (Human)S23mt,Mitochondrial small ribosomal subunit protein mS23
21AU28S ribosomal protein S26, mitochondrialpolymer20524259.81UniProt (Q9BYN8)
Pfam (PF14943)
In PDB
Homo sapiens (Human)S26mt,28S ribosomal protein S13,mitochondrial,S13mt,Mitochondrial small ribosomal subunit protein mS26
22AV28S ribosomal protein S27, mitochondrialpolymer41447669.31UniProt (Q92552)
Pfam (PF10037)
In PDB
Homo sapiens (Human)S27mt,Mitochondrial ribosomal protein S27,Mitochondrial small ribosomal subunit protein mS27
23AY28S ribosomal protein S31, mitochondrialpolymer39545391.51UniProt (Q92665)
Pfam (PF15433)
In PDB
Homo sapiens (Human)S31mt,Imogen 38,Mitochondrial small ribosomal subunit protein mS31
24AZ28S ribosomal protein S33, mitochondrialpolymer10612657.81UniProt (Q9Y291)
Pfam (PF08293)
In PDB
Homo sapiens (Human)S33mt,Mitochondrial small ribosomal subunit protein mS33
25A128S ribosomal protein S35, mitochondrialpolymer32336898.31UniProt (P82673)
Pfam (PF10213)
In PDB
Homo sapiens (Human)S35mt,28S ribosomal protein S28,mitochondrial,S28mt,Mitochondrial small ribosomal subunit protein mS35
26A028S ribosomal protein S34, mitochondrialpolymer21825695.51UniProt (P82930)
Pfam (PF16053)
In PDB
Homo sapiens (Human)S34mt,Mitochondrial small ribosomal subunit protein mS34
27A3Aurora kinase A-interacting proteinpolymer19922395.31UniProt (Q9NWT8)
Pfam (PF08213)
In PDB
Homo sapiens (Human)AURKA-interacting protein,28S ribosomal protein S38,mitochondrial,MRP-S38,Mitochondrial small ribosomal subunit protein mS38
28A4Pentatricopeptide repeat domain-containing protein 3, mitochondrialpolymer68978648.51UniProt (Q96EY7)
Pfam (PF13041)
Pfam (PF13812)
In PDB
Homo sapiens (Human)28S ribosomal protein S39,mitochondrial,MRP-S39,Mitochondrial small ribosomal subunit protein mS39,Transformation-related gene 15 protein,TRG-15
29AD28S ribosomal protein S5, mitochondrialpolymer43048094.61UniProt (P82675)
Pfam (PF21251)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Homo sapiens (Human)S5mt,Mitochondrial small ribosomal subunit protein uS5m
30AF28S ribosomal protein S7, mitochondrialpolymer24228186.21UniProt (Q9Y2R9)
Pfam (PF00177)
In PDB
Homo sapiens (Human)S7mt,Mitochondrial small ribosomal subunit protein uS7m,bMRP-27a,bMRP27a
31AG28S ribosomal protein S9, mitochondrialpolymer39645909.91UniProt (P82933)
Pfam (PF00380)
In PDB
Homo sapiens (Human)S9mt,Mitochondrial small ribosomal subunit protein uS9m
32A16s rRNApolymer1559500019.61GenBank (1563835895)Homo sapiens (Human)
33BtRNAvalpolymer7323266.91Homo sapiens (Human)
34D39S ribosomal protein L2, mitochondrialpolymer30533355.91UniProt (Q5T653)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Homo sapiens (Human)MRP-L2,Mitochondrial large ribosomal subunit protein uL2m
35F39S ribosomal protein L4, mitochondrialpolymer31134970.21UniProt (Q9BYD3)
Pfam (PF00573)
In PDB
Homo sapiens (Human)MRP-L4,Mitochondrial large ribosomal subunit protein uL4m
36H39S ribosomal protein L9, mitochondrialpolymer26730296.41UniProt (Q9BYD2)
Pfam (PF01281)
In PDB
Homo sapiens (Human)MRP-L9,Mitochondrial large ribosomal subunit protein bL9m
37K39S ribosomal protein L13, mitochondrialpolymer17820723.01UniProt (Q9BYD1)
Pfam (PF00572)
In PDB
Homo sapiens (Human)MRP-L13,Mitochondrial large ribosomal subunit protein uL13m
38L39S ribosomal protein L14, mitochondrialpolymer14515973.71UniProt (Q6P1L8)
Pfam (PF00238)
In PDB
Homo sapiens (Human)MRP-L14,39S ribosomal protein L32,mitochondrial,MRP-L32,Mitochondrial large ribosomal subunit protein uL14m
39M39S ribosomal protein L15, mitochondrialpolymer29633473.81UniProt (Q9P015)
Pfam (PF00828)
In PDB
Homo sapiens (Human)MRP-L15,Mitochondrial large ribosomal subunit protein uL15m
40O39S ribosomal protein L17, mitochondrialpolymer17520083.31UniProt (Q9NRX2)
Pfam (PF01196)
In PDB
Homo sapiens (Human)MRP-L17,LYST-interacting protein 2,Mitochondrial large ribosomal subunit protein bL17m
41R39S ribosomal protein L20, mitochondrialpolymer14917479.71UniProt (Q9BYC9)
Pfam (PF00453)
In PDB
Homo sapiens (Human)MRP-L20,Mitochondrial large ribosomal subunit protein bL20m
42S39S ribosomal protein L21, mitochondrialpolymer20522847.71UniProt (Q7Z2W9)
Pfam (PF00829)
In PDB
Homo sapiens (Human)MRP-L21,Mitochondrial large ribosomal subunit protein bL21m
43T39S ribosomal protein L22, mitochondrialpolymer21224369.51UniProt (E7ESL0)
Pfam (PF00237)
In PDB
Homo sapiens (Human)
44W39S ribosomal protein L27, mitochondrialpolymer14816102.91UniProt (Q9P0M9)
Pfam (PF01016)
In PDB
Homo sapiens (Human)MRP-L27,Mitochondrial large ribosomal subunit protein bL27m
45X39S ribosomal protein L28, mitochondrialpolymer25630090.71UniProt (Q13084)
Pfam (PF00830)
In PDB
Homo sapiens (Human)MRP-L28,Melanoma antigen p15,Melanoma-associated antigen recognized by T-lymphocytes,Mitochondrial large ribosomal subunit protein bL28m
46Y39S ribosomal protein L47, mitochondrialpolymer25029508.51UniProt (Q9HD33)
Pfam (PF06984)
In PDB
Homo sapiens (Human)MRP-L47,Mitochondrial large ribosomal subunit protein uL29m,Nasopharyngeal carcinoma metastasis-related protein 1
47Z39S ribosomal protein L30, mitochondrialpolymer16118582.81UniProt (Q8TCC3)
Pfam (PF00327)
In PDB
Homo sapiens (Human)MRP-L30,39S ribosomal protein L28,mitochondrial,MRP-L28,Mitochondrial large ribosomal subunit protein uL30m
48039S ribosomal protein L32, mitochondrialpolymer18821437.81UniProt (Q9BYC8)
Pfam (PF01783)
In PDB
Homo sapiens (Human)MRP-L32,Mitochondrial large ribosomal subunit protein bL32m
49139S ribosomal protein L33, mitochondrialpolymer657635.21UniProt (O75394)
Pfam (PF00471)
In PDB
Homo sapiens (Human)MRP-L33,Mitochondrial large ribosomal subunit protein bL33m
50239S ribosomal protein L34, mitochondrialpolymer9210183.91UniProt (Q9BQ48)
Pfam (PF00468)
In PDB
Homo sapiens (Human)MRP-L34,Mitochondrial large ribosomal subunit protein bL34m
51339S ribosomal protein L35, mitochondrialpolymer18821558.51UniProt (Q9NZE8)
Pfam (PF01632)
In PDB
Homo sapiens (Human)MRP-L35,Mitochondrial large ribosomal subunit protein bL35m
52439S ribosomal protein L36, mitochondrialpolymer10311809.31UniProt (Q9P0J6)
Pfam (PF00444)
In PDB
Homo sapiens (Human)MRP-L36,BRCA1-interacting protein 1,Mitochondrial large ribosomal subunit protein bL36m
53839S ribosomal protein L40, mitochondrialpolymer20624534.41UniProt (Q9NQ50)
Pfam (PF09812)
In PDB
Homo sapiens (Human)MRP-L40,Mitochondrial large ribosomal subunit protein mL40,Nuclear localization signal-containing protein deleted in velocardiofacial syndrome,Up-regulated in metastasis
54b39S ribosomal protein L43, mitochondrialpolymer15517452.81UniProt (Q8N983)
Pfam (PF05047)
In PDB
Homo sapiens (Human)MRP-L43,Mitochondrial large ribosomal subunit protein mL43,Mitochondrial ribosomal protein bMRP36a
55e39S ribosomal protein L46, mitochondrialpolymer27931748.11UniProt (Q9H2W6)
Pfam (PF11788)
In PDB
Homo sapiens (Human)MRP-L46,Mitochondrial large ribosomal subunit protein mL46,P2ECSL
56g39S ribosomal protein L49, mitochondrialpolymer16619225.01UniProt (Q13405)
Pfam (PF05046)
In PDB
Homo sapiens (Human)MRP-L49,Mitochondrial large ribosomal subunit protein mL49,Neighbor of FAU,NOF,Protein NOF1
57i39S ribosomal protein L51, mitochondrialpolymer12815125.91UniProt (Q4U2R6)
Pfam (PF10244)
In PDB
Homo sapiens (Human)MRP-L51,Mitochondrial large ribosomal subunit protein mL51,bMRP-64,bMRP64
58jcDNA FLJ76418, highly similar to Homo sapiens mitochondrial ribosomal protein L52 (MRPL52), transcript variant 1, mRNApolymer12313696.71UniProt (A8K7J6)
Pfam (PF18699)
In PDB
Homo sapiens (Human)
59m39S ribosomal protein L55, mitochondrialpolymer12815160.41UniProt (Q7Z7F7)
Pfam (PF09776)
In PDB
Homo sapiens (Human)MRP-L55,Mitochondrial large ribosomal subunit protein bL31m,Mitochondrial large ribosomal subunit protein mL55
60oRibosomal protein 63, mitochondrialpolymer10212292.31UniProt (Q9BQC6)
Pfam (PF14978)
In PDB
Homo sapiens (Human)hMRP63,Mitochondrial large ribosomal subunit protein mL63,Mitochondrial ribosomal protein 63,Mitochondrial ribosomal protein L57
61qGrowth arrest and DNA damage-inducible proteins-interacting protein 1polymer22225426.91UniProt (Q8TAE8)
Pfam (PF10147)
In PDB
Homo sapiens (Human)39S ribosomal protein L59,mitochondrial,MRP-L59,CKII beta-associating protein,CR6-interacting factor 1,CRIF1,Mitochondrial large ribosomal subunit protein mL64,Papillomavirus L2-interacting nuclear protein 1,PLINP-1,p53-responsive gene 6 protein
62r39S ribosomal protein S18a, mitochondrialpolymer19622224.11UniProt (Q9NVS2)
Pfam (PF01084)
In PDB
Homo sapiens (Human)S18mt-a,39S ribosomal protein S18-3,mitochondrial,MRP-S18-3,Mitochondrial large ribosomal subunit protein bS18a,Mitochondrial large ribosomal subunit protein mL66
63J39S ribosomal protein L11, mitochondrialpolymer19220716.21UniProt (Q9Y3B7)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Homo sapiens (Human)MRP-L11,Mitochondrial large ribosomal subunit protein uL11m
64I39S ribosomal protein L10, mitochondrialpolymer26129322.51UniProt (Q7Z7H8)
Pfam (PF00466)
In PDB
Homo sapiens (Human)MRP-L10,39S ribosomal protein L8,mitochondrial,MRP-L8,Mitochondrial large ribosomal subunit protein uL10m
65N39S ribosomal protein L16, mitochondrialpolymer25128496.31UniProt (Q9NX20)
Pfam (PF00252)
In PDB
Homo sapiens (Human)MRP-L16,Mitochondrial large ribosomal subunit protein uL16m
66PMitochondrial ribosomal protein L18, isoform CRA_bpolymer17920465.31UniProt (A8K9D2)
Pfam (PF00861)
In PDB
Homo sapiens (Human)cDNA FLJ76688,highly similar to Homo sapiens HSPC071 mRNA
67U39S ribosomal protein L23, mitochondrialpolymer15317807.21UniProt (Q16540)
Pfam (PF00276)
In PDB
Homo sapiens (Human)MRP-L23,L23 mitochondrial-related protein,Mitochondrial large ribosomal subunit protein uL23m,Ribosomal protein L23-like
68V39S ribosomal protein L24, mitochondrialpolymer21624953.91UniProt (Q96A35)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Homo sapiens (Human)MRP-L24,Mitochondrial large ribosomal subunit protein uL24m
69E39S ribosomal protein L3, mitochondrialpolymer34838689.61UniProt (P09001)
Pfam (PF00297)
In PDB
Homo sapiens (Human)MRP-L3,Mitochondrial large ribosomal subunit protein uL3m
70539S ribosomal protein L37, mitochondrialpolymer42348183.31UniProt (Q9BZE1)
Pfam (PF07147)
In PDB
Homo sapiens (Human)MRP-L37,39S ribosomal protein L2,mitochondrial,MRP-L2,Mitochondrial large ribosomal subunit protein mL37
71639S ribosomal protein L38, mitochondrialpolymer38044659.41UniProt (Q96DV4)
Pfam (PF01161)
In PDB
Homo sapiens (Human)MRP-L38,Mitochondrial large ribosomal subunit protein mL38
72739S ribosomal protein L39, mitochondrialpolymer33838764.81UniProt (Q9NYK5)
In PDB
Homo sapiens (Human)MRP-L39,39S ribosomal protein L5,mitochondrial,MRP-L5,Mitochondrial large ribosomal subunit protein mL39
73939S ribosomal protein L41, mitochondrialpolymer13715404.71UniProt (Q8IXM3)
Pfam (PF09809)
In PDB
Homo sapiens (Human)MRP-L41,39S ribosomal protein L27 homolog,Bcl-2-interacting mitochondrial ribosomal protein L41,Cell proliferation-inducing gene 3 protein,MRP-L27 homolog,Mitochondrial large ribosomal subunit protein mL41
74a39S ribosomal protein L42, mitochondrialpolymer14216691.21UniProt (Q9Y6G3)
Pfam (PF10210)
In PDB
Homo sapiens (Human)MRP-L42,39S ribosomal protein L31,mitochondrial,MRP-L31,Mitochondrial large ribosomal subunit protein mL42
75c39S ribosomal protein L44, mitochondrialpolymer33237583.31UniProt (Q9H9J2)
In PDB
Homo sapiens (Human)MRP-L44,Mitochondrial large ribosomal subunit protein mL44
76d39S ribosomal protein L45, mitochondrialpolymer30635402.91UniProt (Q9BRJ2)
Pfam (PF04280)
In PDB
Homo sapiens (Human)MRP-L45,Mitochondrial large ribosomal subunit protein mL45
77f39S ribosomal protein L48, mitochondrialpolymer19421856.21UniProt (Q96GC5)
Pfam (PF00338)
In PDB
Homo sapiens (Human)MRP-L48,Mitochondrial large ribosomal subunit protein mL48
78h39S ribosomal protein L50, mitochondrialpolymer15818349.91UniProt (Q8N5N7)
Pfam (PF10501)
In PDB
Homo sapiens (Human)MRP-L50,Mitochondrial large ribosomal subunit protein mL50
79k39S ribosomal protein L53, mitochondrialpolymer11212125.91UniProt (Q96EL3)
Pfam (PF10780)
In PDB
Homo sapiens (Human)MRP-L53,Mitochondrial large ribosomal subunit protein mL53
80l39S ribosomal protein L54, mitochondrialpolymer13815844.21UniProt (Q6P161)
Pfam (PF08561)
In PDB
Homo sapiens (Human)MRP-L54,Mitochondrial large ribosomal subunit protein mL54
81pPeptidyl-tRNA hydrolase ICT1, mitochondrialpolymer20623674.21UniProt (Q14197)
Pfam (PF00472)
In PDB
Homo sapiens (Human)39S ribosomal protein L58,mitochondrial,MRP-L58,Digestion substraction 1,DS-1,Immature colon carcinoma transcript 1 protein,Mitochondrial large ribosomal subunit protein mL62
82s39S ribosomal protein S30, mitochondrialpolymer43950429.61UniProt (Q9NP92)
Pfam (PF07147)
In PDB
Homo sapiens (Human)S30mt,Mitochondrial large ribosomal subunit protein mL65,Mitochondrial large ribosomal subunit protein mS30,Programmed cell death protein 9
83Q39S ribosomal protein L19, mitochondrialpolymer29233585.01UniProt (P49406)
Pfam (PF01245)
In PDB
Homo sapiens (Human)MRP-L19,39S ribosomal protein L15,mitochondrial,MRP-L15,Mitochondrial large ribosomal subunit protein bL19m
84TA, TB, TC39S ribosomal protein L12, mitochondrialpolymer19821378.23UniProt (P52815)
Pfam (PF16320)
Pfam (PF00542)
In PDB
Homo sapiens (Human)MRP-L12,5c5-2,Mitochondrial large ribosomal subunit protein bL12m
85uP-site fingerpolymer655549.81Homo sapiens (Human)
86vElongation factor G, mitochondrialpolymer75183578.51UniProt (Q96RP9)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB
Homo sapiens (Human)EF-Gmt,Elongation factor G 1,mitochondrial,mEF-G 1,Elongation factor G1,hEFG1
87A5mRNApolymer113183.11Homo sapiens (Human)
88A6, A7P-site and E-site tRNApolymer7120742.32Homo sapiens (Human)
89AA, A, D, W, AC...MAGNESIUM IONnon-polymer24.3130Chemie (MG)
90AB, 0, AO, 4, AP...ZINC IONnon-polymer65.47Chemie (ZN)
91AXGUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
92vPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
Sequence modifications
AQ: 1 - 87 (UniProt: P82921)
PDBExternal DatabaseDetails
Arg 50Cys 50variant
X: 1 - 256 (UniProt: Q13084)
PDBExternal DatabaseDetails
Ala 148Thr 148variant
Ser 149Pro 149variant
Gly 150Lys 150variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains91
Total formula weight3073342.7
Non-Polymers*Number of molecules139
Total formula weight4581.9
All*Total formula weight3077924.6
*Water molecules are not included.

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PDB entries from 2024-06-12

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