Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6UH5

Structural basis of COMPASS eCM recognition of the H2Bub nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, EHistone H3polymer13515275.92UniProt (Q92133)
Pfam (PF00125)
In PDB
Xenopus laevis (African clawed frog)
2B, FHistone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
In PDB
Xenopus laevis (African clawed frog)
3C, GHistone H2Apolymer10711694.62UniProt (Q6AZJ8)
Pfam (PF00125)
Pfam (PF16211)
In PDB
Xenopus laevis (African clawed frog)
4DHistone H2Bpolymer12513848.11UniProt (A0A1L8FQ56)
Pfam (PF00125)
UniProt (by SIFTS) (P02281)
In PDB
Xenopus laevis (African clawed frog)
5HHistone H2Bpolymer12513822.11UniProt (A0A1L8FQ56)
Pfam (PF00125)
UniProt (by SIFTS) (P02281)
In PDB
Xenopus laevis (African clawed frog)
6IDNA (146-MER)polymer14644825.61synthetic construct
7JDNA (146-MER)polymer14645305.91synthetic construct
8KSwd3polymer32736458.91UniProt (Q6CLY5)
Pfam (PF00400)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
9MHistone-lysine N-methyltransferase, H3 lysine-4 specificpolymer27531448.51UniProt (Q6CIT4)
Pfam (PF11764)
Pfam (PF00856)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)COMPASS component SET1,SET domain-containing protein 1
10NSwd1polymer43949894.71UniProt (Q6CXF3)
Pfam (PF00400)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
11QUbiquitinpolymer768622.91UniProt (J3QS39)
Pfam (PF00240)
UniProt (by SIFTS) (P0CG47)
In PDB
Homo sapiens (Human)
12RH3 N-terminuspolymer8936.11UniProt (by SIFTS) (P84233)
In PDB
Xenopus laevis (African clawed frog)
13XSpp1polymer34239297.91UniProt (Q6CRQ4)
Pfam (PF00628)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
14LBre2polymer40547287.01UniProt (Q6CTQ1)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
15O, PSdc1polymer13414722.62UniProt (Q6CPN6)
Pfam (PF05186)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
16MZINC IONnon-polymer65.41Chemie (ZN)
17RS-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
Sequence modifications
D: -2 - 122 (UniProt: A0A1L8FQ56)
PDBExternal DatabaseDetails
Pro 7Ala 11conflict
H: -2 - 122 (UniProt: A0A1L8FQ56)
PDBExternal DatabaseDetails
Pro 7Ala 11conflict
Cys 117Lys 121conflict
M: 726 - 1000 (UniProt: Q6CIT4)
PDBExternal DatabaseDetails
Glu 761Asp 761conflict
Q: 1 - 76 (UniProt: J3QS39)
PDBExternal DatabaseDetails
Cys 76Gly 76engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains19
Total formula weight437660.3
Non-Polymers*Number of molecules2
Total formula weight463.8
All*Total formula weight438124.1
*Water molecules are not included.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon