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6UGM

Structural basis of COMPASS eCM recognition of an unmodified nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, EHistone H3polymer13515275.92UniProt (Q92133)
Pfam (PF00125)
In PDB
Xenopus laevis (African clawed frog)
2B, FHistone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
In PDB
Xenopus laevis (African clawed frog)
3C, GHistone H2Apolymer10711694.62UniProt (Q6AZJ8)
Pfam (PF00125)
Pfam (PF16211)
In PDB
Xenopus laevis (African clawed frog)
4DHistone H2Bpolymer12513848.11UniProt (A0A1L8FQ56)
Pfam (PF00125)
UniProt (by SIFTS) (P02281)
In PDB
Xenopus laevis (African clawed frog)
5HHistone H2B 1.1polymer12513834.11UniProt (P02281)
Pfam (PF00125)
In PDB
Xenopus laevis (African clawed frog)H2B1.1
6IDNA (146-MER)polymer14745114.71synthetic construct
7JDNA (146-MER)polymer14645305.91synthetic construct
8KSwd3polymer32736458.91UniProt (Q6CLY5)
Pfam (PF00400)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
9MHistone-lysine N-methyltransferase, H3 lysine-4 specificpolymer27531448.51UniProt (Q6CIT4)
Pfam (PF11764)
Pfam (PF00856)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)COMPASS component SET1,SET domain-containing protein 1
10NSwd1polymer43949894.71UniProt (Q6CXF3)
Pfam (PF00400)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
11RH3 N-terminuspolymer3378.41Xenopus laevis (African clawed frog)
12XSpp1polymer34239297.91UniProt (Q6CRQ4)
Pfam (PF00628)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
13LBre2polymer40547287.01UniProt (Q6CTQ1)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
14O, PSdc1polymer13414722.62UniProt (Q6CPN6)
Pfam (PF05186)
In PDB
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast)
15MS-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
16MZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
D: -2 - 122 (UniProt: A0A1L8FQ56)
PDBExternal DatabaseDetails
Pro 7Ala 11conflict
M: 726 - 1000 (UniProt: Q6CIT4)
PDBExternal DatabaseDetails
Glu 761Asp 761conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains18
Total formula weight428780.9
Non-Polymers*Number of molecules2
Total formula weight463.8
All*Total formula weight429244.7
*Water molecules are not included.

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PDB entries from 2024-05-15

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