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6SA0

Ternary complex of Prim-PolC from Mycobacterium smegmatis with 2nt gapped DNA and UpNHpp

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, DDNA polymerase LigD, polymerase domainpolymer35039416.52UniProt (A0R5T1)
Pfam (PF21686)
In PDB
Mycolicibacterium smegmatis MC2 155
2B, EDNA (5'-D(P*GP*CP*GP*AP*GP*CP*G)-3')polymer72163.42synthetic construct
3C, FDNA (5'-D(*CP*GP*CP*TP*CP*GP*CP*AP*AP*CP*GP*CP*A)-3')polymer154540.02synthetic construct
4H, GDNA (5'-D(P*TP*GP*CP*GP)-3')polymer61825.22synthetic construct
5A, D5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridinenon-polymer483.22Chemie (2KH)
6A, DMANGANESE (II) IONnon-polymer54.94Chemie (MN)
7ACACODYLATE IONnon-polymer137.01Chemie (CAC)
8A, D1,2-ETHANEDIOLnon-polymer62.13Chemie (EDO)
9waterwater18.0458Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight95890.3
Non-Polymers*Number of molecules10
Total formula weight1509.3
All*Total formula weight97399.6
*Water molecules are not included.

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PDB entries from 2024-06-12

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