6PKI
Zebrafish N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (NAGPA) catalytic domain (C56S C230S) in complex with N-acetyl-alpha-D-glucosamine (alpha-GlcNAc) and mannose 6-phosphate (M6P)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase | polymer | 309 | 34048.8 | 4 | UniProt (F1QSF9) Pfam (PF09992) In PDB | Danio rerio (Zebrafish) | |
2 | A, B, C, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 8 | Chemie (NAG) | |||
3 | A, B, C, D | 2-acetamido-2-deoxy-alpha-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NDG) | |||
4 | A, B, C, D | 6-O-phosphono-alpha-D-mannopyranose | non-polymer | 260.1 | 5 | Chemie (M6P) | |||
5 | A | PENTAETHYLENE GLYCOL | non-polymer | 238.3 | 1 | Chemie (1PE) | |||
6 | A, B, C | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
7 | water | water | 18.0 | 625 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 39 - 336 (UniProt: F1QSF9)
PDB | External Database | Details |
---|---|---|
Asp 28 | - | expression tag |
Arg 29 | - | expression tag |
His 30 | - | expression tag |
His 31 | - | expression tag |
His 32 | - | expression tag |
His 33 | - | expression tag |
His 34 | - | expression tag |
His 35 | - | expression tag |
Gly 36 | - | expression tag |
Ser 37 | - | expression tag |
Gly 38 | - | expression tag |
Ser 56 | Cys 75 | engineered mutation |
Ser 230 | Cys 249 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 136195.2 | |
Non-Polymers* | Number of molecules | 22 |
Total formula weight | 4335.3 | |
All* | Total formula weight | 140530.5 |